Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1047 468 7e-127 seq14 104 3e-17 >seq1047 Length=31309 Score = 468 bits (518), Expect = 7e-127 Identities = 1240/1882 (66%), Gaps = 28/1882 (1%) Strand=Plus/Plus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851 ||||| | ||| |||||||| | | || | ||| ||||||| ||| ||||| || Sbjct 16730 TTGTCAACTGTGAACTGAATCGCATTAACAGCTGGTTTGGTACGTAAATAATACATCCCG 16789 Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGA 70911 ||||| || || | |||| ||||| ||||| || |||||||| ||| | || Sbjct 16790 GTTTTAAGGCCCATCTTCCAGCCGTAGAAATGAATTGATGTTAGTTTACCGTAGTTTGGC 16849 Query 70912 TCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 70971 || |||| ||||||||| | ||||| ||| || ||||| ||||| | ||| || ||| Sbjct 16850 TCAGCTACGTGAATATTGAAAGACTGCGATTGGTCAATGAATGCTCCTCGGTCGGCCGCC 16909 Query 70972 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATC 71030 ||||| ||| || || | ||| ||||| | ||||| || | | || | | | Sbjct 16910 ATTTTGATGCAAGTTTTCACAGAAATCTCCCAGACCGTTTTGTACAGATTGCGGA-TGTG 16968 Query 71031 TTCTGGAAGGTT---TGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGAT 71087 || |||| | | | || || || || ||| | || | |||| | || || || Sbjct 16969 TTGCGGAATTTCCTCTATCTTTTGTATTGAGCCATTTTGGGCCAGAATCTTGTTCTTCAT 17028 Query 71088 CTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTG 71147 || || | ||| | || || |||| | || | || | |||| |||| |||||||| Sbjct 17029 TTCATCGTCCCACAGTTCCAATTCAGTTAGATCTTTTAGCAAATGATGATTCACTACTTG 17088 Query 71148 AAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTC 71207 ||| || ||||| | ||| |||||| |||| | ||| || || ||||| | || || Sbjct 17089 AAACTCGCCAGAAAGTACCCTACGATTGTAGACATTTGAAGTGTATGGTTCAAAAGATTC 17148 Query 71208 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATT 71267 || || || | ||||| ||||| || || ||||||||||| || | | || ||| Sbjct 17149 GTTGTTACCGAGTATTTGCGCAGTCGACGCGGTCGGCATAGGCGCTAAAAGCAGGGAATT 17208 Query 71268 TCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATT--CCCAATTCCAAAGATCCGAT 71325 | | ||||||| || | | | ||||||| || | |||||| ||| | |||| Sbjct 17209 GCGCACGCCATGTG-TCACAATATTTCTTTTA-AGCTCAGCCCAATCCCACAATTCCGTA 17266 Query 71326 GG-TACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATA 71384 || | | | || || || ||| | ||| |||| Sbjct 17267 GGCTTCTTCTCCCACATGTCGTACTGAAGG-ATTCCTTTGCTAACTGGACTTCCATCATA 17325 Query 71385 TGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATA 71444 || |||||||| || || | | |||| | ||| || ||||| || | ||||| | || Sbjct 17326 TGATTCGTATGGACCATCCTGTGCGGCCAATTCGCAGCTCGCTTCAAGGGCTCCGAAGTA 17385 Query 71445 AATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATT 71504 ||||||||| || || | | ||| | || ||||| || || | || | Sbjct 17386 AATGGTTTCAAACATTTGTTGATTCAACAGCTGGGCTTCTTCACTTTCGTAAGGGTGGCG 17445 Query 71505 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTT 71564 | | || || || ||||| | ||||| || || || || || || | ||| | | | Sbjct 17446 CATCAAGATGAAAGCATCTGCCATGCCTTGCACTCCGATCCCTATCGGACGGTGGCGCAT 17505 Query 71565 ATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 71624 ||| || | ||||| |||| |||||||||||| ||||| || ||||| || ||||| Sbjct 17506 ATTGGATCGCTTTGCTTCCGGAACAGGATAATAATTTATATCGATGATTTTGTTAAGATT 17565 Query 71625 TCTGACTATTACTTT-GACCACATCCTTTAG-TTTGAGAAAATCAAATCTCCCATC---T 71679 || | || | ||| | | || |||||||| |||| |||| ||| || | | ||| | Sbjct 17566 -CTTAGTAACAGTTTTGGCTACTTCCTTTAGCTTTGCGAAA-TCATATGTACGATCGGGT 17623 Query 71680 ATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCG 71739 | ||||||| ||| ||||||| || ||||| ||||| || || | |||| | | Sbjct 17624 TTCACAAACATGTTTAAGGCAATCGAGGCCAGGTTACACACAGCAATTTCAT---CTTTT 17680 Query 71740 GCA---TATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGT 71796 | | |||| || |||||| ||||| || || ||||||||| ||||| | |||||| Sbjct 17681 GAAGAGTATTCTACAATTTCGGTGCACAGGTTTGAACACTTGATCGTTCCGATATTTTGC 17740 Query 71797 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATC 71856 || |||||||| || |||||||| || ||||| || | || |||||||||| | Sbjct 17741 TGGTTACTCTTACGATTGCACGCATCTTTGTAAAGCATGTAAGGCACTCCAGTTTCAACC 17800 Query 71857 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTT 71916 || ||||||||||| || ||| | || | ||||||| | | || | | Sbjct 17801 TGTGATTCTATAATTGCGAACCATAAATCTTGTGCCTTTACTTGACGGGTGAAACGACCC 17860 Query 71917 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCA 71976 || | ||||| || || | | ||||||||| || ||||| | | |||||| Sbjct 17861 TCGCGCTCGTAGCCAGTGTAGAGTTTTTCGAACTCCTCACCCCATGTCTCCGACAATCCA 17920 Query 71977 GGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAG 72036 ||||| || | || ||||| | |||| | | | | | || || | ||| || Sbjct 17921 GGACAGTCGTGAGGGCACATTAGACTCCACATTTCGTTGGCTTCCACACGCTGCATGAAC 17980 Query 72037 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTA 72096 | |||||||||||| || || || | || || | | ||| || || || || Sbjct 17981 AAATCAGGAATCCACAGCGCGTAGAACATGTCCCTTGCGCGGACCTCTTCTTTGCCAGTG 18040 Query 72097 TTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCC 72156 |||||||| ||||| | ||| | | | ||| |||||| || |||| || || || Sbjct 18041 TTCTTTTTTAGATCCAAAAACTCAAATACATCCCCATGCCATGGCTCCAGATAGATAGCA 18100 Query 72157 ATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 72216 | |||| || || ||||| ||||| || || | || | || || ||||| || || Sbjct 18101 AAGGCTCCGGGTCGCTTGTTACCTCCTTGGTCAACATAACGTGCAGTATTATTGTAGACG 18160 Query 72217 CTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTG 72276 | || ||| || | | ||| || || |||||| || || | ||||| |||| | Sbjct 18161 CGCAGCATCGGTACTAAACCGTTCGAAATACCATTCGTTCCTGCAATATATGTTCCTTTC 18220 Query 72277 GCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 72334 || | ||| | || ||| | | ||||| || || ||| ||||||||| || || | Sbjct 18221 GCCCTAATGCAGTGTACATTCA--GGCCTATGCCACCAGCCGATTTAGAGATCAAGGCAC 18278 Query 72335 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 72394 | |||| | ||||| || || ||||| || ||||| ||| ||| | || || || | Sbjct 18279 ACTGTTTAAGAGTATCGTAAATTCCCTCGATGCTATCGTCCGACATTGTGAGCAGGAAGC 18338 Query 72395 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 72454 || |||| ||| | || |||| | ||| ||| | ||| || ||||||||||||| Sbjct 18339 AGGACGACAGTTGCGGCCGTTGAGTTGCTGCAGCAAACATGGTTGGCGAAGCGTGCGTAA 18398 Query 72455 ACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTA 72514 | || || ||||| | |||||||||||| || || || || ||||| ||||| Sbjct 18399 AGTATCGCTCTGACAGCAAATTGTACGTCTCGATGGCAGAATCAATATCTTCACCATGTA 18458 Query 72515 TTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 72574 | || | || |||||||| | ||| || || || || || || ||||| || |||| Sbjct 18459 TGCCGATAGCAACACGCATGAGCATGTGTTGCGGCCTCTCCACAATCTTCCCCTTAATTT 18518 Query 72575 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 72634 | |||| || ||| ||||||| ||||| |||||||| || ||||| |||||| || | Sbjct 18519 TTAACAGATATGATCTTTCCAATGTTTTGAAACCAAAGTAATTGTAACCAAAGTCACGGT 18578 Query 72635 CGTAAATAATAACCGAATTGAG 72656 |||| || || | ||||| || Sbjct 18579 CGTAGATGATCGCAGAATTAAG 18600 >seq14 Length=264275 Score = 104 bits (114), Expect = 3e-17 Identities = 180/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || || ||||| | ||| |||||||| || | |||||| || || ||||| || Sbjct 132642 TAGGTGTCGATAAGAAGCGAGTACATTTCGCTGTGTACGTTTTCCATCGCGATCTGGAAA 132701 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTT 42454 || |||||||| | |||||| || |||||||| || | || |||||| | | |||| Sbjct 132702 CCATAGAAACAGCGGGCCTCCGTCACCTGTACCTCCTGGCTGAACCGTTCAACCAGATTT 132761 Query 42455 TCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 42514 |||||||| || || || ||| || || || || | || || || |||| | Sbjct 132762 TCGTTCACAATACCATCCGAGGCAGCGAAGAAGGCGAGCACGTGCGAGATGAAATGACGT 132821 Query 42515 TCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACC 42574 || |||| | | | || ||| || || || || || || | ||| || ||||| ||| Sbjct 132822 TCACTCGGTTTCAGTGAATCCCAGTCTTTCATGTCCTTTGAGAGATCCACCTCTTCGACC 132881 Query 42575 GTCCAAAATGATGCTTCTGCCT 42596 ||||| || || ||||| |||| Sbjct 132882 GTCCAGAAAGAAGCTTCGGCCT 132903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671120575887200