Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1479 219 6e-52 seq90 187 4e-42 seq1047 129 9e-25 seq14 118 2e-21 seq1066 100 4e-16 seq196 87.8 3e-12 >seq1479 Length=14069 Score = 219 bits (242), Expect = 6e-52 Identities = 396/573 (69%), Gaps = 16/573 (3%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | ||||| || |||||||| || || | ||| ||||| || ||||| ||| | Sbjct 12174 TTGCGGAAGAAGATAACGCCGGCTCGGGGTCCACGGAGTGTCTTATGGGTTGTCGTGCTG 12233 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 |||| |||| ||||| || || || ||||| | |||| | ||| | ||| Sbjct 12234 ACAACGTCAGCGTACTCGAACGGTGACGGGATGACACCAGCTGCAACGAGGCCGGAGATG 12293 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGG-CTGCATCGGCAATCTCTCGGAATCGTCT 127280 || || ||||| || | ||| ||| ||| ||| || |||||||| ||||| ||| | Sbjct 12294 TGCGCCATATCAGCGAACAGGTAGGCACCGTTCTGG-TCTGCAATCTCGCGGAAGCGTTT 12352 Query 127281 ATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAG 127340 || |||| || || | |||||| | |||| || ||||| | | | || || || || Sbjct 12353 GTAATCCAGGCAGCGCGAATAGCACGAGATGCCAGCAATGATGACCTTCGGCTTAAACAG 12412 Query 127341 ATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTA 127400 ||| ||| | |||||| |||| |||| | ||||||| | ||||||||||| Sbjct 12413 GCGGGCCGACTCCTCGAGTTTGTCATAATCGATCAAGCCAGTCTTGGCGTCCACCTTGTA 12472 Query 127401 CGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA-------CG-TTGCG----GAATCC 127448 ||||||||| ||||| |||| || || ||||| | || ||||| ||| || Sbjct 12473 CGGCATGCTCTCGAAGAAGATGGAGGTGGCGGAGATTTTCTTCGTTTGCGTCATGAAACC 12532 Query 127449 GTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAAC 127508 |||||||| ||||| || || ||||| ||||| |||||||||| ||||| || | | Sbjct 12533 ATGCGTCAGATGGCCACCATCTGGCAGGTCGAGGCCCATGATTCGCCCGTGAGGCTCGAT 12592 Query 127509 GATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCC 127568 | | | ||||| ||||| |||||||| ||||||||||| ||||| || || Sbjct 12593 CAGTGCCGTGTAGACGGCGAAGTTGGCTGGTGAGCCCGAGTATGGTTGCACGTTGCAGCC 12652 Query 127569 CCATTCGGACTCG-TTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGA 127627 ||| | | || | | || | | || ||| ||| |||| || ||||| |||| Sbjct 12653 CCACT-GCTCTGGATCCAGGCGGTATGCCTCGAGGGCCCGCCGCTGAGCCAGCAGCTCGA 12711 Query 127628 TGCGATCGATAAACTCGTTACCACCATAGTATC 127660 | ||||| ||||||||||| || ||||||| Sbjct 12712 TCTCGTCGATGAACTCGTTACCGCCGTAGTATC 12744 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 126723 ACCACGGGTCGTCACCGCAGGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTT 126782 ||| || ||||||| || || |||||||| | ||||| || |||| || ||| Sbjct 11753 ACCGCGTGTCGTCAAGGCCGGTGTACCGAGCCGAATGCCAGAAGGATTGAGGGCCGACTT 11812 Query 126783 GTCTCCGGGTACTGTGTTTTTGTTGCAAGCGATTCTGCACAGTTCGAGGATGCGCTCTGC 126842 ||| || ||||| ||||| |||||||| ||||| | ||||||||| ||| || Sbjct 11813 GTCACCCGGTACCGTGTTCTTGTTGCACGCGATCGAAATCTCCTCGAGGATGTACTCGGC 11872 Query 126843 CGGTGCTCCTGCGAGTCCCACACTGCGCAAATCCACTAGAATCAGATGCACATCGGTACC 126902 | || || | || || || |||| ||| ||||| | || ||||||||||| || Sbjct 11873 TCGCGCACCGGTGATGCCGACCGGACGCAGATCGACTAGCACGAGGTGCACATCGGTGCC 11932 Query 126903 GCCAGTGGTGACGGTGTAGCC 126923 ||| || | || | |||||| Sbjct 11933 GCCCGTCGCCACCGAGTAGCC 11953 >seq90 Length=513413 Score = 187 bits (206), Expect = 4e-42 Identities = 396/586 (68%), Gaps = 10/586 (2%) Strand=Plus/Minus Query 49794 TTACCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCG 49853 || |||| || || ||||||| || ||||||||||| || ||| ||| ||||| | | Sbjct 135977 TTTCCGTCGAACCGACCATGTTCCTGTACATGATGGCATTTATGCTGACATCGGTCGTGG 135918 Query 49854 AGCAGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGT 49913 |||| || |||| | | ||| |||| ||||||||| | || || ||||||| || | | Sbjct 135917 AGCAAGCATTTTTCCTTTACAAAGCCTGCACCGTCGATCACGGGTACTCGCACGAAATCT 135858 Query 49914 GCCACAACATTAGCCAGTACGATGACATCAACAACCGAGTCCAGCAGACTGTGTCTACAT 49973 | | ||||| |||||| | |||||||| || |||||| || ||| || | Sbjct 135857 GTCTTAACATCGAGCAGTACCAGGACATCAAGAAGGAGGTCCAGGTCACGACGTCCACCT 135798 Query 49974 TTCATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTTATATTGGCCTTTTTCCTAG 50033 |||| ||||||||| | |||| ||||||| ||| | | ||||| | || || | Sbjct 135797 TTCACCAGTGGAACAACATCGCCATGTATGTGGTACCCATCTTCCTGGCCATGTTTCTCG 135738 Query 50034 GATCCTATAGTGATAGGCGCGGTAGAAAGATTGTACTCGTATGTGGACTCGTAGGTAAAC 50093 | ||| ||| || | || | ||| || || ||| || || | || || | Sbjct 135737 GTGCCTGGTCGGATCGGAGAGGCCGTAAGCTTCCGCTGGTACTCGGGCTGATCGGGAAGC 135678 Query 50094 TCTTTTTCTCGGCAATGCTAACCGTAAACAGTCTCAAG---AGCTGGCCCGTAGAGTATA 50150 | || | ||||| ||| || || || | | | | | |||||||| ||||| | Sbjct 135677 TGTTCTACTCGGTCATGATAGTGGTGAATACCCGGATGCCCACGTGGCCCGTCGAGTACA 135618 Query 50151 TAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGATTTGACCATATTCG-CA 50209 | |||||||| || | | || |||| || ||||| || ||| | | || || | || Sbjct 135617 TTATCTACACAGCGACACTGCCCAGTGTGCTGACCGGTGCTGATATAGCGATCTTTGCCA 135558 Query 50210 GCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGCACGCTACGAGTGGGC 50269 || |||||||| ||||| ||||| | |||| ||||| | |||||||| || | Sbjct 135557 GC-TGCTTTGCTTACATCTCCGATATCACGACGGTGGAACAGCGCACGCTGCGTATAACG 135499 Query 50270 ATCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCGATCGGTAGTGTGCTG 50329 || | ||||| |||||||||||||||||| | |||||| || |||||| |||| | Sbjct 135498 ATTCTCGATGCGACCTACCTGAGCACGATGCCGATCGGTGTAGCACTCGGTAATGTGATC 135439 Query 50330 TGGAAGCGATTCCG----ATCCTACCCCATCATGTTTGCAATCAAT 50371 | || | | ||| ||| ||| | |||||||| | |||||| Sbjct 135438 TTCAA-CCACACCGGCAAATCGTACACGATCATGTTCACCATCAAT 135394 >seq1047 Length=31309 Score = 129 bits (142), Expect = 9e-25 Identities = 329/495 (66%), Gaps = 8/495 (2%) Strand=Plus/Minus Query 96829 TAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGGGCGGCAATA 96888 |||| || ||||| | | |||||| | |||| || ||| || || || || | Sbjct 18176 TAGTACCGATGCTGCGCGTCTACAATAATACTGCACGTTATGTTGACCAAGGAGGTAACA 18117 Query 96889 AACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTA 96948 | || || || || | || |||| |||| || ||||| | ||| || ||||| ||| Sbjct 18116 AGCGACCCGGAGCCTTTGCTATCTATCTGGAGCCATGGCATGGGGATGTATTTGAGTTTT 18057 Query 96949 TCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCAC 97008 | || | || ||| ||||| ||||||| || || |||||| |||| || || | Sbjct 18056 TGGATCTAAAAAAGAACACTGGCAAAGAAGAGGTCCGCGCAAGGGACATGTTCTACGCGC 17997 Query 97009 TCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGT 97068 | ||| | || |||||||||||| |||| || | | | | ||||| ||||||| Sbjct 17996 TGTGGATTCCTGATTTGTTCATGCAGCGTGTGGAAGCCAACGAAATGTGGAGTCTAATGT 17937 Query 97069 GCCC---CGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGT 97125 |||| ||||| || || || |||| || ||||| || ||||| || | Sbjct 17936 GCCCTCACGACT-GT--CCTGGATTGTCGGAGACATGGGGTGAGGAGTTCGAAAAACTCT 17880 Query 97126 ACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTGTGGA 97185 |||| | |||||||| ||||| || | | | | ||| | |||| ||| | ||| Sbjct 17879 ACACTGGCTACGAGCGCGAGGGTCGTTTCACCCGTCAAGTAAAGGCACAAGATTTATGGT 17820 Query 97186 AGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCG 97245 || || | | ||||| || |||||| || ||||| || ||||| ||| || Sbjct 17819 TCGCAATTATAGAATCACAGGTTGAAACTGGAGTGCCTTACATGCTTTACAAAGAT-GCG 17761 Query 97246 TG-AATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACG 97304 || ||||| || || ||||| | | | || || |||||| | || || |||||||| Sbjct 17760 TGCAATCGTAAGAGTAACCAGCAAAATATCGGAACGATCAAGTGTTCAAACCTGTGCACC 17701 Query 97305 GAAATTGTAGAGTAC 97319 ||||||||||| ||| Sbjct 17700 GAAATTGTAGAATAC 17686 >seq14 Length=264275 Score = 118 bits (130), Expect = 2e-21 Identities = 199/286 (70%), Gaps = 13/286 (5%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| | || || || ||||||||||||||||| ||||| || |||||| || | || | Sbjct 132903 AGGCCGAAGCTTCTTTCTGGACGGTCGAAGAGGTGGATCTCTCAAAGGACATGAAAGACT 132844 Query 125098 GGGAGACTCGTTTGACTGAAAC----TGAGCGAGAGTTTATATCGCACATTTTGGCCTTC 125153 |||| || |||||||| ||| || | || || |||||| | | |||||| Sbjct 132843 GGGA-------TTCACTGAAACCGAGTGAACGTCATTTCATCTCGCACGTGCTCGCCTTC 132791 Query 125154 TTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTT 125212 || || | ||| ||||| || || ||||| ||||| ||||| ||| ||| || ||| | Sbjct 132790 TTCGCTGCCTCGGATGGTATTGTGAACGAAAATCTGGTTGA-ACGGTTCAGCCAGGAGGT 132732 Query 125213 GACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTC 125272 | | |||| || || || || ||||| ||| ||| || ||||| ||| Sbjct 132731 ACAGGTGACGGAGGCCCGCTGTTTCTATGGTTTCCAGATCGCGATGGAAAACGTACACAG 132672 Query 125273 GGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAA 125318 ||||||||||| || || |||| |||||||| |||||| || Sbjct 132671 CGAAATGTACTCGCTTCTTATCGACACCTACATTCGGGATCCGAAA 132626 >seq1066 Length=67579 Score = 100 bits (110), Expect = 4e-16 Identities = 226/340 (66%), Gaps = 0/340 (0%) Strand=Plus/Minus Query 70074 TGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGAGA 70133 |||||||||| || || ||||||||| | |||| || ||| ||| | ||| | Sbjct 16291 TGGGGCCAGTTTATGGGTTCCAGTGGCGTCACTTTGGAGCCACGTACGGCACATGCCACG 16232 Query 70134 CAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGACCA 70193 || || | || ||||| ||||| || | |||||| |||| || |||| || Sbjct 16231 ATGATTACACAGGCAAGGGTAAGGATCAGCTGGCGGAAATCATCGACAAGCTGAAGAACA 16172 Query 70194 ATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGG 70253 |||| || || | ||||| | || || | ||||| || | || | | | |||| Sbjct 16171 ATCCCACCGACCGTCGGATCATCCTGAGCGCCTGGAACCCGGTGGACATTCCCATTATGG 16112 Query 70254 CACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGCT 70313 | || ||||| || |||||||||| ||||||||| | | | || | |||| ||| Sbjct 16111 CTCTTCCACCTTGCCACTGTTTGGTACAGTTTTACGTGGCCAACGGTGAGCTGTCGTGCC 16052 Query 70314 TAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATT 70373 ||||| || | ||||| | || | || || || || |||||||| ||||| | Sbjct 16051 AGATGTACCAACGATCCGCCGATGTAGGGTTGGGCGTGCCATTCAACATTGCGAGCTACT 15992 Query 70374 CTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAA 70413 | || | ||||||||||| || || | || || ||||| Sbjct 15991 CGCTGCTAACGCACATGATCGCGCATGTAACGGGACTGAA 15952 >seq196 Length=65403 Score = 87.8 bits (96), Expect = 3e-12 Identities = 132/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 134242 TCACAAATCAGTTGTGCGATGCGATCACCCTT--TGACACTACAAAGTCGTCATCGGAAT 134299 || ||||| | ||| ||||| ||||| ||||| |||| || |||| | | ||| || Sbjct 36742 TCGCAAATGAATTGGGCGATACGATCGCCCTTCTTGAC-CTCGAAAGCTGCC-TCGCCAT 36799 Query 134300 GGTTAAAGAGGACCACTCCAATGTTTCCAGTATAGTCGCGGTCCACGACACCGGCTCCGA 134359 |||| || || || || || | |||||| ||| || ||| || || |||||||||| Sbjct 36800 GGTTGAACAGCACAACACCGACGTTTCCGCGATAATCTTCGTCAACTACTCCGGCTCCGA 36859 Query 134360 CGTCGATTCCGTACTTGGCTGCCAGTTTGGATCGCGGAGCAATCCTACCGTAGCAACCTT 134419 ||||||| || || |||||||| ||| || || || | || |||||||| || | Sbjct 36860 CGTCGATGAAGTTTTTCACTGCCAGTCCGGAACGAGGCGCCACCCGGCCGTAGCATCCCT 36919 Query 134420 CCGG 134423 |||| Sbjct 36920 CCGG 36923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741038635607200