Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq610 147 5e-30 seq111 140 7e-28 seq966 138 3e-27 seq673 123 6e-23 seq56 116 9e-21 seq1547 86.0 1e-11 >seq610 Length=159711 Score = 147 bits (162), Expect = 5e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 |||||| | || | ||||| ||||| | || ||||| ||||| || || ||||| || Sbjct 159572 TCCCCCACGAAGACGCAGTACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGA 159513 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 ||||| | ||| || || || || |||||||| || || || | ||| ||||| ||||| Sbjct 159512 CAGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGG 159453 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 || ||||| |||||||||||||| || || || || || | |||||| || || || Sbjct 159452 GATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGAC 159393 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| || || || ||||| || || || || || || || ||||||||| Sbjct 159392 CTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCATT 159344 Score = 143 bits (158), Expect = 6e-29 Identities = 172/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || ||||| | || ||||| ||||| || || ||||| Sbjct 159346 ATTCCTCCACGGAGACGGAGCACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCG 159287 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| || || || || |||||||| || || || | ||| ||||| ||| Sbjct 159286 GACAGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGA 159227 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||||||||| || || || || || | |||||| || || Sbjct 159226 GGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCG 159167 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| || || || || || || || |||||||| ||| Sbjct 159166 ACCTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCATATTG 159113 >seq111 Length=461598 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || ||||| ||||||||||| ||||| || ||||| | |||||| Sbjct 359667 AGCACCAGATGAAGCGTCGATTCCTTCTGAATATTGTAGTCGGACAGAGTACGTCCGTCT 359726 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || || | ||| ||||| || || || || || || ||| Sbjct 359727 TCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGCGGAATGCCCTCCTTGTCC 359786 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || ||||| || | ||||| || || ||||| || || || ||| Sbjct 359787 TGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTGATGGTC 359846 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || ||||| || || |||||||| Sbjct 359847 TTACCCGTGAGGGTTTTGACGAAGATCTGCAT 359878 >seq966 Length=353950 Score = 138 bits (152), Expect = 3e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 |||||| | || | || |||||||| | || ||||| || || || || ||||| || Sbjct 451 TCCCCCACGAAGACGGAGCACTAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGA 392 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || || | ||| || || || || |||||||| || || || | ||| ||||| ||||| Sbjct 391 CAGCGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGG 332 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 || ||||| |||||||||||||| || || || || || | |||||| || || || Sbjct 331 AATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATTGTATCGGATGGCTCGAC 272 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| || || || ||||| || || || || || || || ||||||||| Sbjct 271 CTCCAGGGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCATT 223 Score = 136 bits (150), Expect = 9e-27 Identities = 165/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || ||||| | || ||||| |||||||| || ||||| Sbjct 225 ATTCCTCCACGAAGACGGAGCACCAGATGGAGAGTCGATTCCTTCTGAATGTTGTAGTCG 166 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| || || || || |||||||| || || || | ||| ||||| ||| Sbjct 165 GACAGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGA 106 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| |||||||||||||| || || || || || | |||||| || || Sbjct 105 GGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCG 46 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATC 104554 ||||| || || || ||||| || || || || || || || ||| Sbjct 45 ACCTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATC 1 >seq673 Length=25255 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || || ||||| || || || | ||||| Sbjct 24428 AGCACAAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCC 24487 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || || | ||| ||||| || || ||||| || || ||| Sbjct 24488 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCC 24547 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || ||||| || | ||| || || || ||||| ||||| || ||| Sbjct 24548 TGGATCTTCGCCTTCACATTCTCGATGGTGTCCGATGGCTCGACCTCGAGTGTGATGGTC 24607 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || ||||| || || |||||||||||| Sbjct 24608 TTGCCGGTGAGCGTTTTCACGAAAATCTGCATTTTG 24643 >seq56 Length=464437 Score = 116 bits (128), Expect = 9e-21 Identities = 214/311 (69%), Gaps = 2/311 (1%) Strand=Plus/Plus Query 238576 AAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGC 238635 |||| |||||| || ||||| || |||||| | || ||||| | |||||| |||| Sbjct 139567 AAACCCACGATGATCTGTGGAACTCGGCCCAGTTGCAGATGGTGAAGGAAGGCAAGATGC 139626 Query 238636 ATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGG 238695 | | || || || ||||| ||||| || ||||| || || ||||||| ||| || | | Sbjct 139627 ACGGGTTTTTGCGCATGTACTGGGCCAAGAAGATCCTCGAGTGGACTAAATCACCCGAAG 139686 Query 238696 AAGCTCTTAGATATAG-TATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCT 238754 | || || || | | ||| || || |||||| | | | | || || ||||| Sbjct 139687 AGGCGCTC-GAGACTGCTATCTACCTCAACGATCGCTTCAACTTGGATGGGCGCGATCCG 139745 Query 238755 AACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAG 238814 ||||||||||| ||||| |||||||| || ||| | || ||| || ||| ||| Sbjct 139746 AACGGATACGTCGGTTGCATGTGGTCGATCGCTGGCATCCATGATCAGGGTTGGAAAGAG 139805 Query 238815 AGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGAT 238874 | || ||||| || | | ||||||||||||||||| ||| || || ||| Sbjct 139806 CGTGAGATTTTTGGCAAGATCCGCTACATGAATTATGAAGGCTGCAAGCGTAAGTTCGAT 139865 Query 238875 GTAAATGCTTT 238885 || |||||||| Sbjct 139866 GTCAATGCTTT 139876 >seq1547 Length=68724 Score = 86.0 bits (94), Expect = 1e-11 Identities = 204/305 (67%), Gaps = 4/305 (1%) Strand=Plus/Minus Query 165133 CGATCCTGTTTTACATATAGAGCTAAGAAGATGGGCAGATATGATGTTGATAGCACCCTT 165192 |||||| || | ||||| ||||| | | ||||| ||| || | | || || || | Sbjct 50840 CGATCCAGTACTGCATATTGAGCTGGGGAAGTGGGCTGATTTGCTCGTCATTGCTCCGCT 50781 Query 165193 AACAGCAAACAGTTTAGCGAAGATAGCTAACGGTATCTGTAATAACTTGTTAACGTGTAT 165252 ||||||||| | |||||||| ||| ||| | || | || ||||| || | Sbjct 50780 GGATGCAAACAGTCTTGCGAAGATGGCTTCCGGACTGTGCGACAATCTGTTACTATGCAC 50721 Query 165253 AGTTAGAGCGTGGAATATTAATAAACCTTTACTTTTCTGTCCAGCTATGAATACACTTAT 165312 | |||| ||| || | ||||| || ||||||||||| || ||||| |||| || Sbjct 50720 AACCCGAGCTTGGGATCCACAGAAACCGTTGCTTTTCTGTCCGGCCATGAACACACGCAT 50661 Query 165313 GTGGGAACATCCTATTACTGAGCAGCATATAGAAACTCTTAAGCAT-ATGGGG-TACATA 165370 |||||| ||||| || || | ||| || ||||| | || || ||||| || Sbjct 50660 GTGGGAGCATCCGATCACGGCATCGCAAATTGAAACGTTGAA--ATCGTGGGGCCACCGG 50603 Query 165371 GAAGTTGAGTGTATTGAGAAAAAGCTAGCTTGTGGTGATATTGGAAAAGGTGCCATGGCA 165430 ||| || ||| || | ||||| ||| |||||||| | ||| ||| || ||||| Sbjct 50602 GAAATTCCGTGCATAGCGAAAACGCTGATGTGTGGTGACACGGGATTAGGAGCGATGGCG 50543 Query 165431 GAAGT 165435 ||||| Sbjct 50542 GAAGT 50538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151365649911760