Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20]
2,220 sequences; 136,935,538 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq610 147 5e-30
seq111 140 7e-28
seq966 138 3e-27
seq673 123 6e-23
seq56 116 9e-21
seq1547 86.0 1e-11
>seq610
Length=159711
Score = 147 bits (162), Expect = 5e-30
Identities = 170/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391
|||||| | || | ||||| ||||| | || ||||| ||||| || || ||||| ||
Sbjct 159572 TCCCCCACGAAGACGCAGTACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGA 159513
Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451
||||| | ||| || || || || |||||||| || || || | ||| ||||| |||||
Sbjct 159512 CAGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGG 159453
Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511
|| ||||| |||||||||||||| || || || || || | |||||| || || ||
Sbjct 159452 GATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGAC 159393
Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
||| || || || ||||| || || || || || || || |||||||||
Sbjct 159392 CTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCATT 159344
Score = 143 bits (158), Expect = 6e-29
Identities = 172/234 (74%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || | || | || || ||||| | || ||||| ||||| || || |||||
Sbjct 159346 ATTCCTCCACGGAGACGGAGCACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCG 159287
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||| | ||| || || || || |||||||| || || || | ||| ||||| |||
Sbjct 159286 GACAGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGA 159227
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| |||||||||||||| || || || || || | |||||| || ||
Sbjct 159226 GGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCG 159167
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
||||| || || || ||||| || || || || || || || |||||||| |||
Sbjct 159166 ACCTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCATATTG 159113
>seq111
Length=461598
Score = 140 bits (154), Expect = 7e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | || ||||| ||||||||||| ||||| || ||||| | ||||||
Sbjct 359667 AGCACCAGATGAAGCGTCGATTCCTTCTGAATATTGTAGTCGGACAGAGTACGTCCGTCT 359726
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || || || ||||| || || || | ||| ||||| || || || || || || |||
Sbjct 359727 TCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGCGGAATGCCCTCCTTGTCC 359786
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|| ||||| || || ||||| || | ||||| || || ||||| || || || |||
Sbjct 359787 TGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTGATGGTC 359846
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || ||||| || || ||||||||
Sbjct 359847 TTACCCGTGAGGGTTTTGACGAAGATCTGCAT 359878
>seq966
Length=353950
Score = 138 bits (152), Expect = 3e-27
Identities = 168/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391
|||||| | || | || |||||||| | || ||||| || || || || ||||| ||
Sbjct 451 TCCCCCACGAAGACGGAGCACTAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGA 392
Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451
|| || | ||| || || || || |||||||| || || || | ||| ||||| |||||
Sbjct 391 CAGCGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGG 332
Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511
|| ||||| |||||||||||||| || || || || || | |||||| || || ||
Sbjct 331 AATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATTGTATCGGATGGCTCGAC 272
Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
||| || || || ||||| || || || || || || || |||||||||
Sbjct 271 CTCCAGGGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCATT 223
Score = 136 bits (150), Expect = 9e-27
Identities = 165/225 (73%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || | || | || || ||||| | || ||||| |||||||| || |||||
Sbjct 225 ATTCCTCCACGAAGACGGAGCACCAGATGGAGAGTCGATTCCTTCTGAATGTTGTAGTCG 166
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||| | ||| || || || || |||||||| || || || | ||| ||||| |||
Sbjct 165 GACAGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGA 106
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| |||||||||||||| || || || || || | |||||| || ||
Sbjct 105 GGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCG 46
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATC 104554
||||| || || || ||||| || || || || || || || |||
Sbjct 45 ACCTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATC 1
>seq673
Length=25255
Score = 123 bits (136), Expect = 6e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | || || || ||||| || || ||||| || || || | |||||
Sbjct 24428 AGCACAAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCC 24487
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || || || || || || || || | ||| ||||| || || ||||| || || |||
Sbjct 24488 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCC 24547
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|| ||||| || || ||||| || | ||| || || || ||||| ||||| || |||
Sbjct 24548 TGGATCTTCGCCTTCACATTCTCGATGGTGTCCGATGGCTCGACCTCGAGTGTGATGGTC 24607
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| || || || ||||| || || ||||||||||||
Sbjct 24608 TTGCCGGTGAGCGTTTTCACGAAAATCTGCATTTTG 24643
>seq56
Length=464437
Score = 116 bits (128), Expect = 9e-21
Identities = 214/311 (69%), Gaps = 2/311 (1%)
Strand=Plus/Plus
Query 238576 AAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGC 238635
|||| |||||| || ||||| || |||||| | || ||||| | |||||| ||||
Sbjct 139567 AAACCCACGATGATCTGTGGAACTCGGCCCAGTTGCAGATGGTGAAGGAAGGCAAGATGC 139626
Query 238636 ATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGG 238695
| | || || || ||||| ||||| || ||||| || || ||||||| ||| || | |
Sbjct 139627 ACGGGTTTTTGCGCATGTACTGGGCCAAGAAGATCCTCGAGTGGACTAAATCACCCGAAG 139686
Query 238696 AAGCTCTTAGATATAG-TATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCT 238754
| || || || | | ||| || || |||||| | | | | || || |||||
Sbjct 139687 AGGCGCTC-GAGACTGCTATCTACCTCAACGATCGCTTCAACTTGGATGGGCGCGATCCG 139745
Query 238755 AACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAG 238814
||||||||||| ||||| |||||||| || ||| | || ||| || ||| |||
Sbjct 139746 AACGGATACGTCGGTTGCATGTGGTCGATCGCTGGCATCCATGATCAGGGTTGGAAAGAG 139805
Query 238815 AGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGAT 238874
| || ||||| || | | ||||||||||||||||| ||| || || |||
Sbjct 139806 CGTGAGATTTTTGGCAAGATCCGCTACATGAATTATGAAGGCTGCAAGCGTAAGTTCGAT 139865
Query 238875 GTAAATGCTTT 238885
|| ||||||||
Sbjct 139866 GTCAATGCTTT 139876
>seq1547
Length=68724
Score = 86.0 bits (94), Expect = 1e-11
Identities = 204/305 (67%), Gaps = 4/305 (1%)
Strand=Plus/Minus
Query 165133 CGATCCTGTTTTACATATAGAGCTAAGAAGATGGGCAGATATGATGTTGATAGCACCCTT 165192
|||||| || | ||||| ||||| | | ||||| ||| || | | || || || |
Sbjct 50840 CGATCCAGTACTGCATATTGAGCTGGGGAAGTGGGCTGATTTGCTCGTCATTGCTCCGCT 50781
Query 165193 AACAGCAAACAGTTTAGCGAAGATAGCTAACGGTATCTGTAATAACTTGTTAACGTGTAT 165252
||||||||| | |||||||| ||| ||| | || | || ||||| || |
Sbjct 50780 GGATGCAAACAGTCTTGCGAAGATGGCTTCCGGACTGTGCGACAATCTGTTACTATGCAC 50721
Query 165253 AGTTAGAGCGTGGAATATTAATAAACCTTTACTTTTCTGTCCAGCTATGAATACACTTAT 165312
| |||| ||| || | ||||| || ||||||||||| || ||||| |||| ||
Sbjct 50720 AACCCGAGCTTGGGATCCACAGAAACCGTTGCTTTTCTGTCCGGCCATGAACACACGCAT 50661
Query 165313 GTGGGAACATCCTATTACTGAGCAGCATATAGAAACTCTTAAGCAT-ATGGGG-TACATA 165370
|||||| ||||| || || | ||| || ||||| | || || ||||| ||
Sbjct 50660 GTGGGAGCATCCGATCACGGCATCGCAAATTGAAACGTTGAA--ATCGTGGGGCCACCGG 50603
Query 165371 GAAGTTGAGTGTATTGAGAAAAAGCTAGCTTGTGGTGATATTGGAAAAGGTGCCATGGCA 165430
||| || ||| || | ||||| ||| |||||||| | ||| ||| || |||||
Sbjct 50602 GAAATTCCGTGCATAGCGAAAACGCTGATGTGTGGTGACACGGGATTAGGAGCGATGGCG 50543
Query 165431 GAAGT 165435
|||||
Sbjct 50542 GAAGT 50538
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151365649911760
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