Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq673 107 2e-18 seq111 96.9 3e-15 seq966 82.4 6e-11 >seq673 Length=25255 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| | ||| || || |||||| || |||||||| || | || || || |||||| Sbjct 24430 CACAAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA-AAGGGTACGGCCGTCCT 24488 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| || | || | |||||||||||| || | | ||||||||| Sbjct 24489 CCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCT 24548 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || ||| ||| | | | | ||||| || | | ||| ||||| ||| ||||| | Sbjct 24549 GGATCTTCGCCTTCACATTCTCGATGGTGTCCGATGGCTCGACCTCGAGTGTGATGGTCT 24608 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | |||||||| |||||||| ||||||||||| Sbjct 24609 TGCCGGTGAGCGTTTTCACGAAAATCTGCAT 24639 >seq111 Length=461598 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| | |||||| || ||||| ||||| ||||| || | Sbjct 359651 ACCACCACGCAGGCGCAGCACCAGATGAAGCGTCGATTCCTTCTGAATATTGTAGTCGGA 359710 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || |||| ||||||||||| || || | || | ||||||||||||| ||| Sbjct 359711 CAGAGTACGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGCGG 359770 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| || || ||| | | | | || ||||| | | ||| Sbjct 359771 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 359830 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGT 48731 ||| | || ||||| ||||| ||||| ||||| || || ||||||||||||| Sbjct 359831 CTCAAGGGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCGTGT 359883 >seq966 Length=353950 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||||| ||| || || |||||||| |||||||| || | || || | ||||| Sbjct 433 CACTAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGACAGCGTACGACCATCCTC 374 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| || || | || | |||||||||||| || | | |||||| ||| Sbjct 373 CAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGAATGCCTTCCTTATCCTG 314 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||| | | | || ||||||| | ||| ||| | || ||||| || Sbjct 313 AATCTTAGCCTTCACGTTCTCAATTGTATCGGATGGCTCGACCTCCAGGGTGATGGTCTT 254 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||| ||||||||||| Sbjct 253 TCCTGTCAGGGTCTTCACGAAAATCTGCAT 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421239802522220