Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq730 154 9e-33 >seq730 Length=89331 Score = 154 bits (170), Expect = 9e-33 Identities = 200/271 (74%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 12579 AGGATATCGGAGATCCAGCCTGCTTTACGCTTCAGCGTCTTCAGTCGGTATTCATCGAAA 12638 ||||| ||| | ||| | || || ||||| ||||| ||| |||| ||||||||| Sbjct 5184 AGGATCTCGAACTGCCACTCGGCCTTGCGCTTGAGCGTTGACAGGCGGTGCTCATCGAAA 5243 Query 12639 GAACCCTTGCCGCAGTAGTAGTGAACGCGAACGCTTGCACGGTT-GGAACCAACTCGGGC 12697 || |||||||| |||||||||||| ||||| |||| | | || || || || || Sbjct 5244 GAGCCCTTGCCCATGTAGTAGTGAACTCGAACT-TTGCTCTGCGAGGCCCCTACGCGAGC 5302 Query 12698 ACCGCGACCGTTACGCTGTGCGATACTGGCTGGTGTCCATGGCAACGTCAGATGATGGAT 12757 || || || || || || || ||||| |||||||| |||| ||||| |||||||| Sbjct 5303 TCCACGGCCATTCCGTTGCTTAATGCTGGCGGGTGTCCACGGCAGGGTCAGGTGATGGAT 5362 Query 12758 GTCAGTCGTTCCTCGATGCAGGTTGATACCCACCTCTGCCTTTTTGTTGCAGATGATGAT 12817 ||| |||||||| | |||||||| | ||||||||| ||||| ||||||||||| | || Sbjct 5363 GTCGGTCGTTCCATGGTGCAGGTTTACACCCACCTCGGCCTTCTTGTTGCAGATCAGAAT 5422 Query 12818 -CGGAGTCCGGCCCTCCTGGAAGTCGGCAGC 12847 |||| | || || || | | || |||| || Sbjct 5423 GCGGAAT-CGCCCTTCGTTGTAGGCGGCGGC 5452 Score = 136 bits (150), Expect = 2e-27 Identities = 558/860 (65%), Gaps = 35/860 (4%) Strand=Plus/Minus Query 26595 GTCA-CAGCCTGCTTGTGCGCTTCTCCTGATAAA--GCCTGCATCTGGACAAAATCATTG 26651 |||| ||| |||||||||||| || || |||| | ||| |||||| |||||| | Sbjct 88135 GTCAGCAGTCTGCTTGTGCGCCTCACCGGATAGATAGCC--CATCTGAACAAAACTCGGG 88078 Query 26652 GCTGCCGCATTAAGCGCCGTCAGAACATTACGCATATCCGGATCAGGTTCTTCTGCAACC 26711 || ||| | || || |||||||| | || || || || || ||||| ||||| | || Sbjct 88077 GCCGCCACGTTCAGGGCCGTCAGGATGTTGCGGATCTCGGGGTCAGGCTCTTCCACTGCC 88018 Query 26712 ATCCTTACCAGGCGCGCATCC---TTATATGCCTTGGCAAAGATCGCGTTTTGTATACGG 26768 | || | ||| || ||| || || |||||||| || || ||| || || ||| Sbjct 88017 AGCCGGAGCAG---CGACTCCGATTTGTACGCCTTGGCGAATATGGCGGCCTGAATCCGG 87961 Query 26769 TCTACAAGTTGCCGTGTTGGTCGCCCATCTTCAGTTACAAGGCCAGCCGCCTG-TGTGGC 26827 || |||| ||| ||| || || || ||| |||| | || || ||||| | | | Sbjct 87960 TCAACAACCTGCTTTGTCGGGCGACCGTCTGCAGTGAGGTATCCGGCGGCCTGCTCCGCC 87901 Query 26828 ACCAACTTGCGTCATAAATCCGCGAATAAACGCGTCATTACTG-CGGCTAAGCAGATCTC 26886 ||| |||| |||| ||| | | ||| | || ||| |||| || |||||| | Sbjct 87900 CCCAGCTTG-GTCAGGAATGACTGCACAAATGGACGGTTGCTGGCGGCCAA-CAGATCCC 87843 Query 26887 CGCTTTCTGACGGGTTA-AAAAGCGCCATCATCGCCGGTGT-TATGCTGTCGGCATCAAC 26944 | | || | ||| | ||||| ||||||||| | || ||| ||||| || || Sbjct 87842 CCCCCTC-GCTGGGAGAGAAAAGGGCCATCATCTT-GTCGTCTATCTCCTCGGCGTCTAC 87785 Query 26945 AAAAGCCTTTTCACTGGCTGCCATTTCCTGAAGATCAGAAATATTTGAGTCCTTGGCAAA 27004 || | || | | ||||| |||| || ||||| ||||| ||||| |||| || Sbjct 87784 CCGGGCGATCTCTGTCGGAGCCATCCCCTGCAGGTCAGAGATATTGGAGTCTCTGGCGAA 87725 Query 27005 CTGAACGCGGTCAACCTTAGTTAACCGGCGGCGCACCAGTACCGGAGCCGTCAT----TG 27060 ||| |||||| ||||| | | || | |||| | || || ||| || Sbjct 87724 CTGGGCGCGGTTAACCTCATCGAGGCGAACCCTGACCATGATAGGCTCCCGCATACCCTG 87665 Query 27061 ATTCAA--CCTT-TTCAGGAGGTATGCCGAATTCGGTCGCATGATCAATCAGGTACTCAC 27117 | || |||| |||||| ||| | | |||| || | ||||||| | | Sbjct 87664 AATCTGGCCCTTGTTCAGGCCGTACAGCT-------TGGCATTGTCGAGCAGGTACGCCC 87612 Query 27118 GATACCGATCCGCATTGCCGTCCTG-ATAGGCTTTGATGATCCCCATGGTCCGTCCATTA 27176 | ||| | || ||| | || |||| |||||| |||||| ||| || || || ||| Sbjct 87611 GGTACTGGTCTGCAGTACCA-CCTGCATAGGCCCGGATGATAGACATTGTTCGACCGTTA 87553 Query 27177 CCTGACTCAACGGCATTGTCCTCACCAATTATCGGCGCGCCATGGCTGGATAAACCGGAA 27236 |||||||| || | || || | |||||||||||||| ||||| | || ||| Sbjct 87552 CCTGACTCCACCACCAGATCAGGGCCGACAATCGGCGCGCCATGACTGGAAAGCCCCGAA 87493 Query 27237 TCGGTAAGCTGGGCAGGACGCAAATCCTTGGATATCTGGTTGACCTGAAGAAGACTGGAT 27296 || | |||||||| |||||||| | || ||| || | | || ||| || | |||| Sbjct 87492 TCCGCCAGCTGGGCCGGACGCAAGTTCTGGGACATTTTGGCGATCTGCAGGATGGAGGAT 87433 Query 27297 GCGCGGGTCCGGTCGCGCGGCTGAAGTTCCTGGGGATAGTCAGGGTTAATTTTCCCGTCC 27356 ||||| || || || ||||| || || || |||||||| | || || | |||||| Sbjct 87432 TTACGGGTGCGATCCCGGGGCTGCAGCTCTTGCGGATAGTCGGTATTGATCCTGCCGTCC 87373 Query 27357 AGAGTATTGGATACCAAAAGAGCCGAGGCATCGACGATATCAAACGCTGTTTTTACCTCG 27416 || ||||| | || | ||| || || | | || || ||||| ||||| Sbjct 87372 TGATCGTTGGAGGGGATCAGCGAACTGGCCTCAACCACCACGAAGGCGGTTTTCACCTCA 87313 Query 27417 TCACCCTTCGCTGTCACCAC 27436 || || ||||| || || || Sbjct 87312 TCCCCTTTCGCCGTGACTAC 87293 Score = 82.4 bits (90), Expect = 5e-11 Identities = 131/187 (70%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 92151 GGAAATGAGGAGGCGTTGGCTGGTGAACACGCCGATCATCTCTTGTATATCATCGACGAA 92210 || |||||||| | | |||||||| |||||| || | || || ||| | || || Sbjct 32872 GGCAATGAGGAATCTCTCGCTGGTGAGCACGCCCTCCACATGTTCTACATCGTGGATGAG 32931 Query 92211 GCGTCGGGTGTGAGTGATAAAGCATTCAGTGTGATAACAGGTGCGCTGACCGGTAAGG-- 92268 ||||| || || || ||||| || | ||||| | || |||||||| | ||| Sbjct 32932 GCGTCCGGCGTATCAGACAAAGCCTTTGGCGTGATGTCCGGGGCGCTGAC---TCAGGCC 32988 Query 92269 -ATAACCGTATTCTGCTTCTTTCCCAGCCTACGCGACCTTCAGGCTATTTCTACGATTCA 92327 | ||||| || |||| || ||||||||||| || || ||||| |||||||| || Sbjct 32989 GACAACCGGATGTTGCTGCTGTCCCAGCCTACTCGCAACTCTGGCTACTTCTACGACACA 33048 Query 92328 CACCACA 92334 ||||||| Sbjct 33049 CACCACA 33055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303226995592620