Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1354 96.9 2e-15 seq1959 95.1 6e-15 seq1678 95.1 6e-15 seq1240 95.1 6e-15 seq762 91.5 8e-14 seq1677 89.7 3e-13 >seq1354 Length=96653 Score = 96.9 bits (106), Expect = 2e-15 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| |||||| | || |||||||||| ||||||||||||||||||||||||| Sbjct 81751 AAAAATTTGATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACG 81810 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||| ||||| Sbjct 81811 CTCTAACCAACTGAGCTATGGGGCC 81835 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 30617 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 30676 Query 11515 CTGAGCTAATGGGCC 11529 |||||||| ||||| Sbjct 30677 CTGAGCTATGGGGCC 30691 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 31213 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 31272 Query 11515 CTGAGCTAATGGGCC 11529 |||||||| ||||| Sbjct 31273 CTGAGCTATGGGGCC 31287 >seq1959 Length=111567 Score = 95.1 bits (104), Expect = 6e-15 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 11449 ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCT 11508 ||||||| | ||| || |||||||||| ||||||||||||||||||||||||||||| Sbjct 72202 ATCAAATGGCTCCA-GAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCT 72144 Query 11509 RACCAACTGAGCTAATGGGCC 11529 ||||||||||||| ||||| Sbjct 72143 AACCAACTGAGCTATGGGGCC 72123 Score = 93.3 bits (102), Expect = 2e-14 Identities = 82/102 (80%), Gaps = 7/102 (7%) Strand=Plus/Minus Query 11434 TAGAATTAATAAAA------AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 |||||| || |||| ||||| || | ||| || |||||||||| |||||||| Sbjct 72751 TAGAATAAACAAAATAGTAGAATCATATGGCTCCA-GAGAGGATCGAACTCACGACCTTC 72693 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| ||||||||||||| ||||| Sbjct 72692 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTATGGGGCC 72651 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 74919 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 74860 Query 11516 TGAGCTAATGGGCC 11529 ||||||| ||||| Sbjct 74859 TGAGCTATGGGGCC 74846 >seq1678 Length=1064 Score = 95.1 bits (104), Expect = 6e-15 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 735 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 794 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||| ||||||| Sbjct 795 TGAGCTATGGGGCCGT 810 >seq1240 Length=1116 Score = 95.1 bits (104), Expect = 6e-15 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 775 ATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCA 834 Query 11514 ACTGAGCTAATGGGCC 11529 ||||||||| ||||| Sbjct 835 ACTGAGCTATGGGGCC 850 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 19 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 78 Query 11515 CTGAGCTAATGGGCC 11529 |||||||| ||||| Sbjct 79 CTGAGCTATGGGGCC 93 >seq762 Length=8400 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 5538 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 5479 Query 11516 TGAGCTAATGGGCC 11529 ||||||| ||||| Sbjct 5478 TGAGCTATGGGGCC 5465 Score = 87.8 bits (96), Expect = 9e-13 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 5794 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 5735 Query 11516 TGAGCTA 11522 ||||||| Sbjct 5734 TGAGCTA 5728 >seq1677 Length=19600 Score = 89.7 bits (98), Expect = 3e-13 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 1333 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGCTATTAGCACGACGCTCTAACCAAC 1392 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||| ||||||| Sbjct 1393 TGAGCTATGGGGCCGT 1408 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261484125028720