Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq966 113 4e-20 seq610 107 2e-18 seq122 102 7e-17 seq111 89.7 5e-13 seq673 86.0 6e-12 >seq966 Length=353950 Score = 113 bits (124), Expect = 4e-20 Identities = 167/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 94775 TACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAA 94834 |||||||| || | | || | ||| | || | ||| ||||||||||| | ||| || Sbjct 456 TACACTCCCCCACGAAGACGGAGCACTAGATGGAGAGTCGATTCCTTTTGGATGTTGTAG 397 Query 94835 TCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 ||| || | || || |||||||||||| ||||| | ||||| | | ||||||| Sbjct 396 TCGGACA--GCGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGAT 339 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||||||||| ||||| || || | ||| || ||||| ||| | | || || | Sbjct 338 CTGGAGGAATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATTGTATCGGATG 279 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| || | |||||||| ||||| || || || ||||| || |||||||| Sbjct 278 GCTCGACCTCCAGGGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCAT 224 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || |||||| | | || | ||||| || | ||| |||||||| || | | Sbjct 234 AAAATCTGCATTCCTCCACGAAGACGGAGCACCAGATGGAGAGTCGATTCCTTCTGAATG 175 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| || ||| |||||||||||| ||||| | ||||| | | ||| Sbjct 174 TTGTAGTCGGACAGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGC 115 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||||||||| || ||||| || || | ||| || ||||| ||| | | || || Sbjct 114 TGATCTGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCG 55 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATC 95002 | | ||||| || | |||||||| ||||| || || || ||||| || ||| Sbjct 54 GATGGCTCGACCTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATC 1 >seq610 Length=159711 Score = 107 bits (118), Expect = 2e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || |||||| | | || | ||||| || | ||| |||||||| || | | Sbjct 159355 AAAATCTGCATTCCTCCACGGAGACGGAGCACCAGATGGAGAGTCGATTCCTTCTGGATG 159296 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| || ||| |||||||||||| ||||| | ||||| | | ||| Sbjct 159295 TTGTAGTCGGACAGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGC 159236 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||||||||| || ||||| || || | ||| || ||||| ||| | | || || Sbjct 159235 TGATCTGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCG 159176 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | ||||| || | |||||||| ||||| || || || ||||| || |||||||| Sbjct 159175 GATGGCTCGACCTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCAT 159117 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 94775 TACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAA 94834 ||| |||| || | | |||| |||| || | ||| |||||||| || | ||| || Sbjct 159577 TACGCTCCCCCACGAAGACGCAGTACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAG 159518 Query 94835 TCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCT 94894 ||| || ||| |||||||||||| ||||| | ||||| | | ||||||||| Sbjct 159517 TCGGACAGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCT 159458 Query 94895 GGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG 94954 ||||| || ||||| || || | ||| || ||||| ||| | | || || | | Sbjct 159457 GGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGC 159398 Query 94955 TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | |||||||| ||||| || || || ||||| || |||||||| Sbjct 159397 TCGACCTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCAT 159345 >seq122 Length=254344 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCCT 94856 |||||||||| || || ||||| || | |||||| ||| || || || | || | Sbjct 68470 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCGGACAGGGTACGTCCG--TCTT 68527 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||||||| || ||| | ||||| || | ||||||||||| ||||| || || ||||| | Sbjct 68528 CCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCT 68587 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || ||||||||| ||| || || | | || || || | ||||| || | Sbjct 68588 GGATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGGCTCCACCTCCAGAGTGATCGTCT 68647 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 | ||||| | || ||||| ||||||||||| || Sbjct 68648 TGCCAGTCAACGTCTTCACGAAGATCTGCATACT 68681 >seq111 Length=461598 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGG 94850 |||| ||||| || | || |||||||| || | || || ||| || ||| || | Sbjct 359664 CGCAGCACCAGATGAAGCGTCGATTCCTTCTGAATATTGTAGTCGGACAGAGTACGTCCG 359723 Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 || |||||||| || || | ||||| | | |||||||| || ||||| || || | Sbjct 359724 --TCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGCGGAATGCCCTCCT 359781 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | || || ||||| || ||| || || | | | ||||| |||| |||| Sbjct 359782 TGTCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTGA 359841 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || || || || ||||| || ||||||||||| Sbjct 359842 TGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 359878 >seq673 Length=25255 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | ||||| | | ||||||||||| || || || || ||| Sbjct 24485 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTG 24544 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || ||| ||||| | | ||||| || | |||||| Sbjct 24545 TCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCCGATGGCTCGACCTCGAGTGTGATG 24604 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || |||||||| || |||||||| Sbjct 24605 GTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 24639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448278759919200