Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20]
2,220 sequences; 136,935,538 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq966 113 4e-20
seq610 107 2e-18
seq122 102 7e-17
seq111 89.7 5e-13
seq673 86.0 6e-12
>seq966
Length=353950
Score = 113 bits (124), Expect = 4e-20
Identities = 167/235 (71%), Gaps = 4/235 (2%)
Strand=Plus/Minus
Query 94775 TACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAA 94834
|||||||| || | | || | ||| | || | ||| ||||||||||| | ||| ||
Sbjct 456 TACACTCCCCCACGAAGACGGAGCACTAGATGGAGAGTCGATTCCTTTTGGATGTTGTAG 397
Query 94835 TCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892
||| || | || || |||||||||||| ||||| | ||||| | | |||||||
Sbjct 396 TCGGACA--GCGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGAT 339
Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952
|||||||||| ||||| || || | ||| || ||||| ||| | | || || |
Sbjct 338 CTGGAGGAATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATTGTATCGGATG 279
Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| ||||| || | |||||||| ||||| || || || ||||| || ||||||||
Sbjct 278 GCTCGACCTCCAGGGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCAT 224
Score = 98.7 bits (108), Expect = 9e-16
Identities = 162/234 (69%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| | | || |||||| | | || | ||||| || | ||| |||||||| || | |
Sbjct 234 AAAATCTGCATTCCTCCACGAAGACGGAGCACCAGATGGAGAGTCGATTCCTTCTGAATG 175
Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888
|| || ||| || ||| |||||||||||| ||||| | ||||| | | |||
Sbjct 174 TTGTAGTCGGACAGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGC 115
Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948
||||||||||| || ||||| || || | ||| || ||||| ||| | | || ||
Sbjct 114 TGATCTGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCG 55
Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATC 95002
| | ||||| || | |||||||| ||||| || || || ||||| || |||
Sbjct 54 GATGGCTCGACCTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATC 1
>seq610
Length=159711
Score = 107 bits (118), Expect = 2e-18
Identities = 167/239 (70%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| | | || |||||| | | || | ||||| || | ||| |||||||| || | |
Sbjct 159355 AAAATCTGCATTCCTCCACGGAGACGGAGCACCAGATGGAGAGTCGATTCCTTCTGGATG 159296
Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888
|| || ||| || ||| |||||||||||| ||||| | ||||| | | |||
Sbjct 159295 TTGTAGTCGGACAGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGC 159236
Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948
||||||||||| || ||||| || || | ||| || ||||| ||| | | || ||
Sbjct 159235 TGATCTGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCG 159176
Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| | ||||| || | |||||||| ||||| || || || ||||| || ||||||||
Sbjct 159175 GATGGCTCGACCTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCAT 159117
Score = 105 bits (116), Expect = 6e-18
Identities = 163/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 94775 TACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAA 94834
||| |||| || | | |||| |||| || | ||| |||||||| || | ||| ||
Sbjct 159577 TACGCTCCCCCACGAAGACGCAGTACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAG 159518
Query 94835 TCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCT 94894
||| || ||| |||||||||||| ||||| | ||||| | | |||||||||
Sbjct 159517 TCGGACAGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCT 159458
Query 94895 GGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG 94954
||||| || ||||| || || | ||| || ||||| ||| | | || || | |
Sbjct 159457 GGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGC 159398
Query 94955 TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || | |||||||| ||||| || || || ||||| || ||||||||
Sbjct 159397 TCGACCTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCAT 159345
>seq122
Length=254344
Score = 102 bits (112), Expect = 7e-17
Identities = 152/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCCT 94856
|||||||||| || || ||||| || | |||||| ||| || || || | || |
Sbjct 68470 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCGGACAGGGTACGTCCG--TCTT 68527
Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916
||||||| || ||| | ||||| || | ||||||||||| ||||| || || ||||| |
Sbjct 68528 CCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCT 68587
Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976
|| || ||||||||| ||| || || | | || || || | ||||| || |
Sbjct 68588 GGATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGGCTCCACCTCCAGAGTGATCGTCT 68647
Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010
| ||||| | || ||||| ||||||||||| ||
Sbjct 68648 TGCCAGTCAACGTCTTCACGAAGATCTGCATACT 68681
>seq111
Length=461598
Score = 89.7 bits (98), Expect = 5e-13
Identities = 151/217 (70%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGG 94850
|||| ||||| || | || |||||||| || | || || ||| || ||| || |
Sbjct 359664 CGCAGCACCAGATGAAGCGTCGATTCCTTCTGAATATTGTAGTCGGACAGAGTACGTCCG 359723
Query 94851 AATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910
|| |||||||| || || | ||||| | | |||||||| || ||||| || || |
Sbjct 359724 --TCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGCGGAATGCCCTCCT 359781
Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970
|||| | || || ||||| || ||| || || | | | ||||| |||| ||||
Sbjct 359782 TGTCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTGA 359841
Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| || || || || ||||| || |||||||||||
Sbjct 359842 TGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 359878
>seq673
Length=25255
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||||||||| || ||| | ||||| | | ||||||||||| || || || || |||
Sbjct 24485 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTG 24544
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || ||||| || ||| ||||| | | ||||| || | ||||||
Sbjct 24545 TCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCCGATGGCTCGACCTCGAGTGTGATG 24604
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || || |||||||| || ||||||||
Sbjct 24605 GTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 24639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448278759919200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |