Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20]
2,220 sequences; 136,935,538 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1753 179 6e-41
seq808 179 6e-41
seq1001 172 9e-39
>seq1753
Length=3044
Score = 179 bits (198), Expect = 6e-41
Identities = 200/267 (75%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| || | |||||| ||||||||||| || ||||| ||||| || |||
Sbjct 1872 GCCAAGCGTCACCGAAAGGTTCTTCGTGATAACATCCAGGGCATCACGAAGCCTGCCATC 1813
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
||||||||||| |||||||| ||||| |||||| |||| || || |||| || ||||
Sbjct 1812 CGTCGTCTGGCGCGTCGTGGAGGAGTGAAGCGTATCTCCGGCCTGATCTACGAGGAGACC 1753
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | ||| ||||| | ||||| ||| ||| |||| |||||| || ||| ||||||
Sbjct 1752 CGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGCGGTCACCTACACCGAG 1693
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || || ||||| || || | ||||| | || || || |||| || || |||
Sbjct 1692 CACGCCAAGCGCAAGACGGTGACGGCGATGGACGTGGTGTACGCTCTGAAGCGACAGGGC 1633
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| | | || ||||| ||| |||||
Sbjct 1632 CGCACCCTGTACGGTTTCGGAGGTTAA 1606
>seq808
Length=12711
Score = 179 bits (198), Expect = 6e-41
Identities = 200/267 (75%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| |||||||| || | |||||| ||||||||||| || ||||| ||||| || |||
Sbjct 12032 GCCAAGCGTCACCGAAAGGTTCTTCGTGATAACATCCAGGGCATCACGAAGCCTGCCATC 12091
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
||||||||||| |||||||| ||||| |||||| |||| || || |||| || ||||
Sbjct 12092 CGTCGTCTGGCGCGTCGTGGAGGAGTGAAGCGTATCTCCGGCCTGATCTACGAGGAGACC 12151
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | ||| ||||| | ||||| ||| ||| |||| |||||| || ||| ||||||
Sbjct 12152 CGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGCGGTCACCTACACCGAG 12211
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || || ||||| || || | ||||| | || || || |||| || || |||
Sbjct 12212 CACGCCAAGCGCAAGACGGTGACGGCGATGGACGTGGTGTACGCTCTGAAGCGACAGGGC 12271
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
|| | | || ||||| ||| |||||
Sbjct 12272 CGCACCCTGTACGGTTTCGGAGGTTAA 12298
>seq1001
Length=59008
Score = 172 bits (190), Expect = 9e-39
Identities = 200/270 (74%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||||||||| | | | || ||||||||||| || ||||||||||| || |||
Sbjct 36364 GCCAAGCGTCATCGTAAAGTGTTGCGCGATAACATCCAGGGCATCACCAAGCCGGCCATC 36423
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||||||||| ||||| ||||| |||||| | || || || |||| || || |
Sbjct 36424 CGTCGTCTGGCTCGCCGTGGCGGAGTGAAGCGTATTTCCGGCCTGATCTACGAGGAAACC 36483
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| || |||||| | |||||| ||| ||| |||| ||||| | ||| || ||
Sbjct 36484 CGTGGAGTGTTGAAGGTGTTCCTCGAGAACGTGATCCGCGATGCCGTTACCTACACGGAA 36543
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || |||||||| ||||| |||||||| | || || || |||| || || |||
Sbjct 36544 CACGCCAAGCGTAAGACCGTCACGGCCATGGATGTGGTGTACGCCCTGAAGCGCCAGGGC 36603
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702
|| | | || || || || ||||| ||
Sbjct 36604 CGCACTCTCTACGGCTTCGGCGGTTAAGCT 36633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79073170238460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |