Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1753 179 6e-41 seq808 179 6e-41 seq1001 172 9e-39 >seq1753 Length=3044 Score = 179 bits (198), Expect = 6e-41 Identities = 200/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | |||||| ||||||||||| || ||||| ||||| || ||| Sbjct 1872 GCCAAGCGTCACCGAAAGGTTCTTCGTGATAACATCCAGGGCATCACGAAGCCTGCCATC 1813 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| |||||||| ||||| |||||| |||| || || |||| || |||| Sbjct 1812 CGTCGTCTGGCGCGTCGTGGAGGAGTGAAGCGTATCTCCGGCCTGATCTACGAGGAGACC 1753 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||||| ||| ||| |||| |||||| || ||| |||||| Sbjct 1752 CGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGCGGTCACCTACACCGAG 1693 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| || || | ||||| | || || || |||| || || ||| Sbjct 1692 CACGCCAAGCGCAAGACGGTGACGGCGATGGACGTGGTGTACGCTCTGAAGCGACAGGGC 1633 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| ||| ||||| Sbjct 1632 CGCACCCTGTACGGTTTCGGAGGTTAA 1606 >seq808 Length=12711 Score = 179 bits (198), Expect = 6e-41 Identities = 200/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | |||||| ||||||||||| || ||||| ||||| || ||| Sbjct 12032 GCCAAGCGTCACCGAAAGGTTCTTCGTGATAACATCCAGGGCATCACGAAGCCTGCCATC 12091 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| |||||||| ||||| |||||| |||| || || |||| || |||| Sbjct 12092 CGTCGTCTGGCGCGTCGTGGAGGAGTGAAGCGTATCTCCGGCCTGATCTACGAGGAGACC 12151 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||||| ||| ||| |||| |||||| || ||| |||||| Sbjct 12152 CGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGCGGTCACCTACACCGAG 12211 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| || || | ||||| | || || || |||| || || ||| Sbjct 12212 CACGCCAAGCGCAAGACGGTGACGGCGATGGACGTGGTGTACGCTCTGAAGCGACAGGGC 12271 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| ||| ||||| Sbjct 12272 CGCACCCTGTACGGTTTCGGAGGTTAA 12298 >seq1001 Length=59008 Score = 172 bits (190), Expect = 9e-39 Identities = 200/270 (74%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | | || ||||||||||| || ||||||||||| || ||| Sbjct 36364 GCCAAGCGTCATCGTAAAGTGTTGCGCGATAACATCCAGGGCATCACCAAGCCGGCCATC 36423 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||||||||| ||||| ||||| |||||| | || || || |||| || || | Sbjct 36424 CGTCGTCTGGCTCGCCGTGGCGGAGTGAAGCGTATTTCCGGCCTGATCTACGAGGAAACC 36483 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || |||||| | |||||| ||| ||| |||| ||||| | ||| || || Sbjct 36484 CGTGGAGTGTTGAAGGTGTTCCTCGAGAACGTGATCCGCGATGCCGTTACCTACACGGAA 36543 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || |||||||| ||||| |||||||| | || || || |||| || || ||| Sbjct 36544 CACGCCAAGCGTAAGACCGTCACGGCCATGGATGTGGTGTACGCCCTGAAGCGCCAGGGC 36603 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | || || || || ||||| || Sbjct 36604 CGCACTCTCTACGGCTTCGGCGGTTAAGCT 36633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073170238460