Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq673 102 7e-17 seq610 91.5 1e-13 seq966 87.8 1e-12 >seq673 Length=25255 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | |||||| || |||||||| || ||||||||||| | Sbjct 24413 CCACCACGAAGTCGCAGCACAAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 24472 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||||| || ||||| || | || || ||||| || || || Sbjct 24473 AGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 24532 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| || | | |||||| | | | ||||| ||||| Sbjct 24533 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCCGATGGCTCGACC 24592 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || | |||||||| || ||||| |||||||| || ||||||||||||||| Sbjct 24593 TCGAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATTTTG 24643 >seq610 Length=159711 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | |||||||| ||| || || || ||||| || ||||||||||||| | Sbjct 159571 CCCCCACGAAGACGCAGTACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAC 159512 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||| || || || || | ||||| ||||| || || ||| Sbjct 159511 AGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGG 159452 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || || || ||| | |||||| | | | || ||| ||||| Sbjct 159451 ATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGACC 159392 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| |||||||| ||||| ||||| || || || |||||||||||| Sbjct 159391 TCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCATT 159344 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/236 (69%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| ||| || || || ||||| || ||||||||||||| | Sbjct 159343 CCTCCACGGAGACGGAGCACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAC 159284 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||||| || || || || | ||||| ||||| || || ||| Sbjct 159283 AGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGG 159224 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || || || ||| | |||||| | | | || ||| ||||| Sbjct 159223 ATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGACC 159164 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT-TTTGTAGC 16943 |||| |||||||| ||||| ||||| || || || ||||||||||| || ||||| Sbjct 159163 TCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCATATTGGTAGC 159108 >seq966 Length=353950 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || || || |||||||| ||||||||||||| || || | ||| Sbjct 435 AGCACTAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGACAGCGTACGACCATCC 376 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || || || || | ||||| ||||| || || ||| | ||| || || || Sbjct 375 TCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGAATGCCTTCCTTATCC 316 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | |||||| | | | || ||| ||||| |||| ||||||||| Sbjct 315 TGAATCTTAGCCTTCACGTTCTCAATTGTATCGGATGGCTCGACCTCCAGGGTGATGGTC 256 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| ||||| || || || |||||||||||| Sbjct 255 TTTCCTGTCAGGGTCTTCACGAAAATCTGCATT 223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405077039837800