Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20]
2,220 sequences; 136,935,538 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq154 150 1e-31
seq1 140 2e-28
seq111 109 4e-19
>seq154
Length=26053
Score = 150 bits (166), Expect = 1e-31
Identities = 163/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 6158 CACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAAT 6217
||| |||| ||| | |||||||| |||||||| | ||| |||||||| ||||| ||
Sbjct 20779 CACCATGGCTACCGTCAACGTAAACCGTAATGTCACCGACATCTTCTACCGGTACAAGAT 20720
Query 6218 GCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAA 6277
||| |||||| || ||||| || || ||||| ||||| || || || ||||| || ||
Sbjct 20719 GCCTCGCATCAATGCGAAGGTAGAAGGCAAGGGTAACGGCATCAAGACGGTCATCGTGAA 20660
Query 6278 CATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGG 6337
|||| | || || ||| ||| | || || ||||| ||||| ||||| || ||||| ||
Sbjct 20659 CATGGCCGAGGTTGCTCGGGCCATTGGCCGTCCTGCAACCTATCCGACCAAGTATTTTGG 20600
Query 6338 GTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
||||| || || ||||||||||| || || ||||
Sbjct 20599 ATGCGAGCTCGGTGCTCAGACGCAATTCGACTACAA 20564
Score = 129 bits (142), Expect = 4e-25
Identities = 134/176 (76%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434
||||| || ||||| || || || |||||| | | | ||||||||||| | ||||||
Sbjct 20485 AACGAACGATTCATTGTGAATGGTTCGCATGATGCGACGAAGCTGCAGGATCTGCTTGAC 20426
Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494
||||| ||||||||||| ||||| || | ||| ||||| || ||||| ||||| || ||
Sbjct 20425 GGCTTCATTCGCAAGTTCGTGCTCTGCCCGGAGTGCGACAATCCGGAAACCGATCTCATC 20366
Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGG 6550
|| || | |||| ||||| || ||||| ||||| || ||||||| ||||||
Sbjct 20365 GTATCGTCGAAGAAGGGAACCATTTCGCAGGGTTGCAAGGCTTGCGGTTTCCATGG 20310
>seq1
Length=7490
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1644 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAGGGAATCTCGT 1703
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 1704 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1738
Score = 107 bits (118), Expect = 1e-18
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3988 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCAT 4047
Query 20007 GGTAATATTTAGCCTTA 20023
||| ||||||||| |||
Sbjct 4048 GGTGATATTTAGCTTTA 4064
>seq111
Length=461598
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | || |||| ||||| |||||| || ||||| ||||||||||| || ||
Sbjct 359651 ACCACCACGCAGGCGCAGCACCAGATGAAGCGTCGATTCCTTCTGAATATTGTAGTCGGA 359710
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
|| | |||| |||| || | || || || || || || || || || ||||| | ||
Sbjct 359711 CAGAGTACGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGCGG 359770
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| ||| || |||||| || || ||||||||||| || ||||| || ||
Sbjct 359771 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 359830
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || |||||||| | |||||| ||||| ||||||||
Sbjct 359831 CTCAAGGGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 359878
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334938137584820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |