Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq154 150 1e-31 seq1 140 2e-28 seq111 109 4e-19 >seq154 Length=26053 Score = 150 bits (166), Expect = 1e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 6158 CACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAAT 6217 ||| |||| ||| | |||||||| |||||||| | ||| |||||||| ||||| || Sbjct 20779 CACCATGGCTACCGTCAACGTAAACCGTAATGTCACCGACATCTTCTACCGGTACAAGAT 20720 Query 6218 GCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAA 6277 ||| |||||| || ||||| || || ||||| ||||| || || || ||||| || || Sbjct 20719 GCCTCGCATCAATGCGAAGGTAGAAGGCAAGGGTAACGGCATCAAGACGGTCATCGTGAA 20660 Query 6278 CATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGG 6337 |||| | || || ||| ||| | || || ||||| ||||| ||||| || ||||| || Sbjct 20659 CATGGCCGAGGTTGCTCGGGCCATTGGCCGTCCTGCAACCTATCCGACCAAGTATTTTGG 20600 Query 6338 GTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 ||||| || || ||||||||||| || || |||| Sbjct 20599 ATGCGAGCTCGGTGCTCAGACGCAATTCGACTACAA 20564 Score = 129 bits (142), Expect = 4e-25 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 ||||| || ||||| || || || |||||| | | | ||||||||||| | |||||| Sbjct 20485 AACGAACGATTCATTGTGAATGGTTCGCATGATGCGACGAAGCTGCAGGATCTGCTTGAC 20426 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 ||||| ||||||||||| ||||| || | ||| ||||| || ||||| ||||| || || Sbjct 20425 GGCTTCATTCGCAAGTTCGTGCTCTGCCCGGAGTGCGACAATCCGGAAACCGATCTCATC 20366 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGG 6550 || || | |||| ||||| || ||||| ||||| || ||||||| |||||| Sbjct 20365 GTATCGTCGAAGAAGGGAACCATTTCGCAGGGTTGCAAGGCTTGCGGTTTCCATGG 20310 >seq1 Length=7490 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1644 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAGGGAATCTCGT 1703 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1704 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1738 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 3988 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCAT 4047 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||| ||| Sbjct 4048 GGTGATATTTAGCTTTA 4064 >seq111 Length=461598 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || |||| ||||| |||||| || ||||| ||||||||||| || || Sbjct 359651 ACCACCACGCAGGCGCAGCACCAGATGAAGCGTCGATTCCTTCTGAATATTGTAGTCGGA 359710 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || | |||| |||| || | || || || || || || || || || ||||| | || Sbjct 359711 CAGAGTACGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGCGG 359770 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||| || |||||| || || ||||||||||| || ||||| || || Sbjct 359771 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 359830 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || |||||||| | |||||| ||||| |||||||| Sbjct 359831 CTCAAGGGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 359878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334938137584820