Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1567 122 2e-22 seq1615 91.5 3e-13 seq561 91.5 3e-13 seq89 91.5 3e-13 seq76 91.5 3e-13 seq53 91.5 3e-13 seq1831 89.7 1e-12 seq1242 89.7 1e-12 seq865 89.7 1e-12 seq797 89.7 1e-12 seq87 89.7 1e-12 seq109 86.0 1e-11 >seq1567 Length=65240 Score = 122 bits (134), Expect = 2e-22 Identities = 298/446 (67%), Gaps = 12/446 (3%) Strand=Plus/Plus Query 218566 CGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCC 218625 ||||| ||||| || || | ||||| || ||||| ||||||||| | | || | Sbjct 48195 CGTTCGATTCCGTGCATGCTCGATGGGCTGAAGCCCGGCCAGCGTAAGGTGATGTTCACG 48254 Query 218626 GCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCC 218685 |||||||| ||| | ||| | ||||| || ||| | | |||| || | Sbjct 48255 TGCTTCAAGCGTAACGATAAGCGAGAGGTGAAGGTGGCCCAGCTGGCCGGTTCGGTGGCG 48314 Query 218686 GAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCA---TG 218742 ||||| || | || || ||||| || ||| || || | | || | | || || Sbjct 48315 GAAATGTCCGCTTATCACCACGGCGAACAG--TC-GCTGTGCAGCACTATCATCAATCTG 48371 Query 218743 GCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGT 218802 || ||| ||| ||| ||||| |||||||| ||| ||||| ||| ||||||||||||| Sbjct 48372 GCCCAGAACTTTGTCGGCAGCAACAACATTAACCTGCTGTACCCGGGCGGTCAGTTTGGT 48431 Query 218803 TCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCG 218862 | || | |||||| ||||| || ||| | | | || |||||||| | | |||| Sbjct 48432 ACGCGGTTGACGGGTGGCAAGGACAGCGCTAGTCCGCGTTACATCTTTACCATGCTGTCA 48491 Query 218863 CCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGAC 218922 || |||| |||| | ||| ||| | ||| ||| || || |||||| || || Sbjct 48492 ACCTTGACACGCCTCATCTTCCATCCGCTCGACGATCCACTGCTCGAGTATC---AGTAC 48548 Query 218923 GATG--GTTCTTCG-ATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTA 218979 || | || || |||||||| | |||||| |||| |||||| | ||||| || Sbjct 48549 GAGGACAATCAGCGTATTGAGCCGGTATGGTATCTGCCGATCATTCCGATGTTGCTGGTG 48608 Query 218980 AATGGTGCCAATGGTATCGGGACAGG 219005 || |||||| | |||||||| || || Sbjct 48609 AACGGTGCCGAAGGTATCGGCACGGG 48634 >seq1615 Length=55738 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 43851 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 43792 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 43791 CCCCACGTTGGGC 43779 >seq561 Length=41888 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 7170 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 7111 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 7110 CCCCACGTTGGGC 7098 >seq89 Length=236950 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 67107 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 67048 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 67047 CCCCACGTTGGGC 67035 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 90783 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 90842 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 90843 CCCCACGTTGGGC 90855 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 91399 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 91458 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 91459 CCCCACGTTGGGC 91471 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 103631 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 103572 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 103571 CCCCACGTTGGGC 103559 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 106621 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 106680 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 106681 CCCCACGTTGGGC 106693 >seq76 Length=30173 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 18336 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 18277 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 18276 CCCCACGTTGGGC 18264 >seq53 Length=245784 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 94543 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 94484 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 94483 CCCCACGTTGGGC 94471 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 94993 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 95052 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 95053 CCCCACGTTGGGC 95065 >seq1831 Length=73062 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 35610 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 35551 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 35550 CCCACGTTGGGC 35539 >seq1242 Length=1720 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1379 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1320 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1319 CCCACGTTGGGC 1308 >seq865 Length=339490 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 246765 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 246824 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 246825 CCCACGTTGGGC 246836 >seq797 Length=26409 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 3321 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3380 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 3381 CCCACGTTGGGC 3392 >seq87 Length=924360 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 502456 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 502397 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 502396 CCCACGTTGGGC 502385 >seq109 Length=520119 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142049 GCATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTC 142108 ||||||| || ||||||| ||| ||||||||||||||||||||||||||| | |||||| Sbjct 151854 GCATGTCCCTTTGGCGCAGCGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTC 151795 Query 142109 GACCCCCGCCAGAGA 142123 || |||| | || || Sbjct 151794 GATCCCCACAAGGGA 151780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027807564467020