Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq372 147 3e-30 seq1047 131 2e-25 seq1693 86.0 7e-12 >seq372 Length=50997 Score = 147 bits (162), Expect = 3e-30 Identities = 286/412 (69%), Gaps = 8/412 (2%) Strand=Plus/Plus Query 8526 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCTCAAAATGAGGAG 8585 || |||||||| |||| ||| ||| || ||||| || | || || || ||| | Sbjct 39728 TACCAAGCATCCACCTCCGAGCTGTACGGCAAAGTGGTCGAGACACCCCAGAACGAGAAA 39787 Query 8586 ACACCCTTCTATCCACGATCCGTCTATGGCGTCT-CAAAGGT-TGCGGCACATTGGCTCG 8643 || ||||||||||| || || |||| | | | | ||| | | ||| | | ||| ||| Sbjct 39788 ACTCCCTTCTATCCCCGCTCGCCGTATG-CATGTGCCAAGATGTACGG-ATACTGGATCG 39845 Query 8644 TGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACG 8703 ||| |||||||| || | || | | | ||||| ||| ||| ||||| |||||||| | Sbjct 39846 TGATCAATTACCGCGAGGCGTACGATATGTTTGCCTGCAACGGGATTCTGTTCAACCATG 39905 Query 8704 AGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-CGAT-GGTATCAAACA 8761 | || ||||| || || | |||| ||||| |||||||| || | ||| | || | Sbjct 39906 AATCGCCCCGACGCGGAGAGAATTTTGTGACCCGTAAGATCACTCGTTCGGTCGCGAAGA 39965 Query 8762 AATCGTCGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTG 8821 |||| | |||| || ||| | | | || |||| || ||| | || || | ||||| Sbjct 39966 TATCG-CTCGGGC-AGCAGGAATGCGTCGAGCTGGGTAATCTCGATTCCAAGCGAGACTG 40023 Query 8822 GGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGA 8881 ||| ||||| ||||||||||| || || |||||||| | | || || || | |||| Sbjct 40024 GGGTCACGCGAAGGACTATGTGGAGGCGATGTGGCTGATGATGCAGCAGGAGAAACCGGA 40083 Query 8882 CGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 8933 || | |||| | || || || |||||||| || || | |||||||| ||| Sbjct 40084 AGACTTTGTCATTGCCACCGGCGAGACACATTCGGTGCGCGAGTTCGTGGAG 40135 >seq1047 Length=31309 Score = 131 bits (144), Expect = 2e-25 Identities = 435/675 (64%), Gaps = 9/675 (1%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 |||| ||| | |||||||| ||||| | || |||||||| | ||||| || || || Sbjct 17117 TAGACATTTGAAGTGTATGGTTCAAAAGATTCGTTGTTACCGAGTATTTGCGCAGTCGAC 17176 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || || ||||| || || | || ||| || || | || | | | ||| | Sbjct 17177 GCGGTCGGCATAGGCGCTAAAAGCAGGGAATTGCGCACGCCATGTGTCACAATATTTCTT 17236 Query 114062 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 114121 || || | |||| || | | | | || | || |||||| || |||| ||| Sbjct 17237 TTAAGCTCAGCCCAATCCCACAATTCCGTAGGCTTCTTCTCCCACATGTCGTACTGAAGG 17296 Query 114122 ATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAAT 114181 || |||| | |||| ||| ||| ||| |||||||| || || | |||||| Sbjct 17297 ATTCCTTTGCTAACTGGACTTCCATCATATGATTCGTATGGACCATCCTGTGCGGCCAAT 17356 Query 114182 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 114241 ||| ||||||| || |||||| || || || || ||||| || | ||||| | Sbjct 17357 TCGCAGCTCGCTTCAAGGGCTCCGAAGTAAATGGTTTCAAACATTTGTTGATTCAACAGC 17416 Query 114242 TTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGG 114301 | ||| || || || | | | | || ||| || || |||| || | ||||| Sbjct 17417 TGGGCTTCTTCACTTTCGTAAGGGTGGCGCATCAAGATGAAAGCATCTGCCATGCCTTGC 17476 Query 114302 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGA 114358 || |||| || || || || || | |||||| || ||| | ||| || ||| Sbjct 17477 ACTCCGATCCCTATCGGACGGTGGCGCATATTGGA---TCGCTTTGCTTCCGGAACAGGA 17533 Query 114359 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 114418 ||| |||| ||||||| | | || ||||| || || ||| || | | ||| | Sbjct 17534 TAATAATTTATATCGATGATTTTGTTAAGATTCTTAGTAACAGTTTTGGCTACTTCCTTT 17593 Query 114419 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 114478 |||||| || ||||| | | ||| || || ||| || | | ||| || || Sbjct 17594 AGCTTTGCGAAATCATATGTACGA---TCGGGTTTCACAAACATGTTTAAGGCAATCGAG 17650 Query 114479 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 114538 ||||| |||||||||| | ||||| || || ||| |||| |||||| || |||| Sbjct 17651 GCCAGGTTACACACAGCAATTTCATCTTTTGAAGAGTATTCTACAATTTCGGTGCACAGG 17710 Query 114539 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 114598 ||||||| ||| || || || | || | || || ||| || |||||||| ||| Sbjct 17711 TTTGAACACTTGATCGTTCCGATATTTTGCTGGTTACTCTTACGATTGCACGCATCTTTG 17770 Query 114599 TAAAGCATGTATGGC 114613 ||||||||||| ||| Sbjct 17771 TAAAGCATGTAAGGC 17785 >seq1693 Length=148903 Score = 86.0 bits (94), Expect = 7e-12 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 10947 CACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGT-TGATTT 11005 ||| ||||| | |||||||| || || ||||||||||| | ||| |||||| | | | Sbjct 53102 CACCGCGTTTTCTTCCGACGGCATCGATCTCATCGATGAACAGGATGCACGGTGCGCTCT 53161 Query 11006 TCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCC 11065 || | ||| | | |||| || || || || | | ||| ||||| |||||||||||| Sbjct 53162 TC-CTGGCCATTGCAAACATGTCACGCACACGGGACGGACCAACACCGACAAACATTTCC 53220 Query 11066 ACAAAATTGGCGGCGGA-ACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCG 11124 | ||| | || | || || | |||||| || ||||||| |||||| || | || Sbjct 53221 AAAAACTCGGAACCCGACACCGT-GATGAACGGTACGTTGGCTTCACCGGCAGTCGCCTT 53279 Query 11125 GGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152 ||| || || || || ||||| || ||| Sbjct 53280 GGCCAGTAGCGTTTTACCCGTTCCCGGT 53307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597337023437600