Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq111 104 3e-17 seq1638 98.7 1e-15 seq87 95.1 1e-14 seq892 91.5 2e-13 seq321 91.5 2e-13 seq1836 87.8 2e-12 seq1723 87.8 2e-12 seq1637 87.8 2e-12 seq833 87.8 2e-12 >seq111 Length=461598 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| ||| | || ||||| ||||||||||| || | |||||| || || Sbjct 359664 CGCAGCACCAGATGAAGCGTCGATTCCTTCTGAATATTGTAGTCGGACAGAGTACGTCCG 359723 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| |||||||| || || |||||||| || | || | || ||||||| Sbjct 359724 TCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGCGGAATGCCCTCCTTG 359783 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || || | || | | ||| || | || || || | |||||| Sbjct 359784 TCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTGATG 359843 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || ||||| || || || || ||||| ||||| Sbjct 359844 GTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 359878 >seq1638 Length=53948 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 4/92 (4%) Strand=Plus/Plus Query 56991 GTTTATGAAAA----ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACA 57046 ||||| ||||| ||||||||| || | | |||||||||| |||||||||||||||| Sbjct 4124 GTTTAAGAAAAGAGTATTTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACA 4183 Query 57047 GGCGGACATACTCACCACTATACTACCGAGGA 57078 ||||| ||||| |||||||||||| |||||| Sbjct 4184 GGCGGGGATACTGACCACTATACTATCGAGGA 4215 >seq87 Length=924360 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| | |||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 253184 AAAAATCTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 253125 Query 57058 TCACCACTATACTACCGAGGAT 57079 | |||||||||||| ||||||| Sbjct 253124 TGACCACTATACTATCGAGGAT 253103 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 253884 TTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 253825 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 253824 TATACTATCGAGGA 253811 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 || ||||| || | | |||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 251773 TTGTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 251832 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 251833 ACTATACTATCGAGGA 251848 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 254201 TTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 254260 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 254261 ACTATACTATCGAGGA 254276 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 252343 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 252284 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 252283 TACTATCGAGGA 252272 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 254612 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 254553 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 254552 TACTATCGAGGA 254541 >seq892 Length=19077 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| ||| ||| || | | |||||||||| ||||||||||||||||||||| ||| Sbjct 926 AAAAATGTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 985 Query 57057 CTCACCACTATACTACCGAGGA 57078 || |||||||||||| |||||| Sbjct 986 CTGACCACTATACTATCGAGGA 1007 >seq321 Length=53978 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 56998 AAAAATT-TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||| ||| |||||| || | | |||||||||| ||||||||||||||||||||| ||| Sbjct 1275 AAATATTCTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 1216 Query 57057 CTCACCACTATACTACCGAGGA 57078 || |||||||||||| |||||| Sbjct 1215 CTGACCACTATACTATCGAGGA 1194 >seq1836 Length=23313 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 23107 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 23048 Query 57064 CTATACTACCGAGGAT 57079 |||||||| ||||||| Sbjct 23047 CTATACTATCGAGGAT 23032 >seq1723 Length=33783 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/87 (84%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 57002 ATTTTC--TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059 |||||| ||| || | | |||||||||| ||||||||||||||||||||| ||||| Sbjct 32212 ATTTTCCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTT 32153 Query 57060 ACCACTATACTACCGAGGA-TTGAATA 57085 |||||||||||| |||||| ||| ||| Sbjct 32152 ACCACTATACTATCGAGGACTTGCATA 32126 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 29631 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 29690 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 29691 TACTATCGAGGA 29702 >seq1637 Length=183544 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 656 TTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 597 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 596 ACTATACTATCGAGGA 581 >seq833 Length=7226 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 574 TTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACC 633 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 634 ACTATACTATCGAGGA 649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543197725844800