Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1047 132 5e-26 seq673 114 1e-20 seq111 114 1e-20 seq966 109 5e-19 seq122 95.1 1e-14 >seq1047 Length=31309 Score = 132 bits (146), Expect = 5e-26 Identities = 902/1449 (62%), Gaps = 36/1449 (2%) Strand=Plus/Plus Query 153998 TAAATCTTCAACCAAGTGCTGGTTAATTACTTGAAAATCGCCGGCCAATACGCGGCGCAC 154057 || ||||| | ||| || || || | ||||||||| ||||| | | ||| | || Sbjct 17056 TAGATCTTTTAGCAAATGATGATTCACTACTTGAAACTCGCCAGAAAGTACCCTACGATT 17115 Query 154058 ATACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGT 154117 || | ||| ||| | || || || ||||||||||| || | |||||| || || | Sbjct 17116 GTAGACATTTGAAGTGTATGGTTCAAAAGATTCGTTGTTACCGAGTATTTGCGCAGTCGA 17175 Query 154118 TGCTGTGGGCATATACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAA 154177 || || |||||| ||| | | || || || |||| || ||| | |||| Sbjct 17176 CGCGGTCGGCATAGGCGCTAAAAGCAGGGAATTGCGCACGCCATGTGTCACAATATTTCT 17235 Query 154178 TTTTAAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAA 154237 ||| | || ||||||| |||||| | ||||| | | | |||||||||||| || | Sbjct 17236 TTTAAGCTCAGCCCAATCCCACAATTCCGTAGGCTTCTTCTCCCACATGTCGTACTGAAG 17295 Query 154238 AACACCCAAACTCGCCGGACTGTCACTATAACTAGAGTACGGCCCGTTCAGTTTTGCCAA 154297 | || || | ||||| || ||| ||| || || | | || ||||| Sbjct 17296 GATTCCTTTGCTAACTGGACTTCCATCATATGATTCGTATGGACCATCCTGTGCGGCCAA 17355 Query 154298 GTCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTTCGGCAATTTGTTTGTTTAACAT 154357 ||||| || ||||| | || | |||| | |||||| ||||||| || |||| Sbjct 17356 TTCGCAGCTCGCTTCAAGGGCTCCGAAGTAAATGGTTTCAAACATTTGTTGATTCAACAG 17415 Query 154358 TTTGGCTTTGTCACTTTCGTACGGCAATCCCAATATACAAAAAGCATCGGCGAGCCCTTG 154417 | ||||| ||||||||||| || | || | |||||||| || | ||||| Sbjct 17416 CTGGGCTTCTTCACTTTCGTAAGGGTGGCGCATCAAGATGAAAGCATCTGCCATGCCTTG 17475 Query 154418 AATGCCCACTCCAACGGGTCTGTGTTTTAAATTCGATTCTTTGGCAGCCTCCAGAGGATA 154477 | || | || | || | ||| | ||| ||| || || || | |||||| Sbjct 17476 CACTCCGATCCCTATCGGACGGTGGCGCATATTGGATCGCTTTGCTTCCGGAACAGGATA 17535 Query 154478 ATAATTGATATCGATAATTTTATTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA 154537 |||||| |||||||| ||||| || | Sbjct 17536 ATAATTTATATCGATGATTTTGTTAAGATTCTTAGTAACAGTTTTGGCTACTTCCTTTAG 17595 Query 154538 ---TGCGACAAAATCAAAC--AC--TCCGCTTTTAATAAAACGATTTACACACACAGACG 154590 ||||| ||||| | || || | ||| | || | | || | || | || | Sbjct 17596 CTTTGCGA---AATCATATGTACGATCGGGTTTCACAAACATGTTTAAGGCAATC-GAGG 17651 Query 154591 CCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCACAAAT 154650 ||| ||| || || |||||||| || | ||||| |||||||| | ||||| | Sbjct 17652 CCAGGTTACACACAGCAATTTCATCTTTTGAAGAGTATTCTACAATTTCGGTGCACAGGT 17711 Query 154651 TACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCTTTGT 154710 | || || || || | |||| ||| || || ||||| || ||||||| Sbjct 17712 TTGAACACTTGATCGTTCCGATATTTTGCTGGTTACTCTTACGATTGCACGCATCTTTGT 17771 Query 154711 ACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGACTTC 154770 | | ||||| || || ||||| || || | ||| ||||||| |||| || | || Sbjct 17772 AAAGCATGTAAGGCACTCCAGTTTCAACCTGTGATTCTATAATTG--CGAACCATAAATC 17829 Query 154771 --GCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGTTTTTC 154828 | |||| ||||||| || || ||| |||| ||| || ||| |||||||| Sbjct 17830 TTGTGCCTTTACTTGACGGGTGAAACGACCCTCGCGCTCGTAGCCAGTGTAGAGTTTTTC 17889 Query 154829 AAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAATGACCA 154888 ||||| || | |||||||| || |||||| || || ||||| | ||| Sbjct 17890 GAACTCCTCACCCCATGTCTCCGACAATCCAGGACAGTCGTGAGGGCACATTAGACTCCA 17949 Query 154889 CATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAACAA 154948 ||||||||| || || || | ||| |||||||| || | ||||| ||||| |||| Sbjct 17950 CATTTCGTTGGCTTCCACACGCTGCATGAACAAATCAGGAATCCACAGCGCGTAGAACAT 18009 Query 154949 ATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCATATAT 155008 || | || ||||| ||| |||| |||| || |||||| ||| ||| Sbjct 18010 GTCCCTTGCGCGGACCTCTTCTTTGCCAGTGTTCTTTTTTAGATCCAAAAACTCAAATAC 18069 Query 155009 GTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCC--TTTGCGT-TTTCCTCCTTG 155065 || | ||||| ||||| | ||| | || | || || | || | || |||||||| Sbjct 18070 ATCCCCATGCCATGGCTCCAGATAGATAGCAAAGGCTCCGGGTCGCTTGTTACCTCCTTG 18129 Query 155066 ATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGT 155125 || || | ||| || ||||||||| ||||||| || ||| | | ||| | | | Sbjct 18130 GTCAACATAACGTGCAGTATTATTGTAGACGCGCAGCATCGGTACTAAACCGTTCGAAAT 18189 Query 155126 GC----CGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAACGC 155181 | |||| ||| | ||| || ||| | || || ||||| | || Sbjct 18190 ACCATTCGTTCCTGCAATATATGTTCCTTTCGCCCTAATGC----AGTGTACATTCAGGC 18245 Query 155182 CCAAACCTCC-GCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCCT 155240 | | || || |||| ||||||| || ||||| | | ||| ||||| ||||| Sbjct 18246 CTATGCCACCAGCCG-ATTTAGAGATCAAGGCACACTGTTTAAGAGTATCGTAAATTCCC 18304 Query 155241 TTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAG---GTTGAGGG 155297 | |||||| || || || || | || ||| || || || | ||| | |||||| Sbjct 18305 TCGATGCTATCGTCCGACATTGTGAGCAGGAAGCAGGACGACAGTTGCGGCCGTTGAG-- 18362 Query 155298 CAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAA-CATTTTGTTGGCGGTTAAGTT 155356 | || ||||| | || || |||||| ||||| || || | | || || Sbjct 18363 -TTGCTGCAGCAAACATGGTTGGCGAAGCGTGCGTAAAGTATCGCTCTGACAG-CAAATT 18420 Query 155357 GTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCAG 155416 ||| || |||||||| | ||||| || ||| ||||| ||||| || || ||||| || Sbjct 18421 GTACGTCTCGATGGCAGAATCAATATCTTCACCATGTATGCCGATAGCAACACGCATGAG 18480 Query 155417 CATGTGTTG 155425 ||||||||| Sbjct 18481 CATGTGTTG 18489 >seq673 Length=25255 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || ||||| ||||| | ||||| || || || |||||||| || | Sbjct 24412 ACCACCACGAAGTCGCAGCACAAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 24471 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || |||| || |||||||||||||| | || || |||||||| || || || Sbjct 24472 AAGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 24531 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || ||| ||| ||| | || || | || || Sbjct 24532 GATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCCGATGGCTCGAC 24591 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||||||||| | ||||| |||||||| |||||||| Sbjct 24592 CTCGAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATTTT 24642 >seq111 Length=461598 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| ||||||| ||||||||| || ||||| ||||| || | Sbjct 359651 ACCACCACGCAGGCGCAGCACCAGATGAAGCGTCGATTCCTTCTGAATATTGTAGTCGGA 359710 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || ||||||| ||||||||||| || | || || |||||||| || || || Sbjct 359711 CAGAGTACGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGCGG 359770 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| ||| ||| | ||||| || || || Sbjct 359771 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 359830 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| || || | ||||| ||||| || ||||| Sbjct 359831 CTCAAGGGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 359878 >seq966 Length=353950 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||||||||| | |||||||| ||||| |||||||| || | | || || | || Sbjct 435 AGCACTAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGACAGCGTACGACCATCC 376 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || || | || || |||||||| || |||||||| ||||| || || Sbjct 375 TCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGAATGCCTTCCTTATCC 316 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | |||||| | || || || | || | |||| Sbjct 315 TGAATCTTAGCCTTCACGTTCTCAATTGTATCGGATGGCTCGACCTCCAGGGTGATGGTC 256 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || |||| || || |||||||| |||||| Sbjct 255 TTTCCTGTCAGGGTCTTCACGAAAATCTGCATT 223 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | |||||||| || ||||||||||| || | | || || | || Sbjct 207 AGCACCAGATGGAGAGTCGATTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCC 148 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || || | || || |||||||| || ||||| || ||||| || || Sbjct 147 TCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGGATGCCTTCCTTATCC 88 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | ||||| | || || || | ||| | |||| Sbjct 87 TGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGACCTCCAGAGTGATGGTC 28 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAAT 64437 || || |||| || || |||||||| Sbjct 27 TTTCCTGTCAGGGTCTTCACGAAAAT 2 >seq122 Length=254344 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || ||||| || || | | ||| || ||||||| |||||||||||| Sbjct 68482 GTCGACTCCTTCTGGATGTTATAGTCGGACAGGGTACGTCCGTCTTCCAGCTGCTTGCCG 68541 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | |||||||| || || ||||| || || || || || || || ||| Sbjct 68542 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 68601 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | ||||| | ||||| || | ||| | |||||||| ||||| || Sbjct 68602 ACGTTCTCGATGGTATCCGAAGGCTCCACCTCCAGAGTGATCGTCTTGCCAGTCAACGTC 68661 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 68662 TTCACGAAGATCTGCAT 68678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499630934856800