Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq78 109 4e-19 >seq78 Length=241554 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 108340 GCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCC 108399 ||||| || || ||||| |||||||| || ||| ||||| |||| | ||||||||| Sbjct 62536 GCCGGCTTTGGCGTGACTGCCGGCGTTCACCGGCTGTGGTGCCACCGCTCATACAAGGCC 62595 Query 108400 ACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATC 108459 | ||||| | | ||||| | |||| |||| | || || || ||||| ||| Sbjct 62596 AAGCTGCCGTTGCGCATCATCCTGATGTGCTGCTACTCGATCGCGGGCCAAAACACGATC 62655 Query 108460 CCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC-GACGGCCGACCC 108518 | ||||| | ||||| | | |||||||||||||| || || ||||| || || Sbjct 62656 TACGACTGGGTCCGGGATCATCGCATCCACCACAAGTACTCGGAAACGGACGG-TGATCC 62714 Query 108519 ACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567 ||||||||| ||| |||| ||| || | ||||||| || ||||| ||| Sbjct 62715 ACACAACGCGAACCGGGGCTTCCTGTACGCGCACGTCGGTTGGCTGATG 62763 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 108883 GCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCC 108942 ||| | ||||| ||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 65105 GCTATGGGCGAAGGATGGCACAACTACCACCACGTGTTCCCGTGGGACTACAAGGCCGCC 65164 Query 108943 GAGTTGGGGAACGACT 108958 || |||| ||| ||| Sbjct 65165 GAACTGGGCAACTACT 65180 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/116 (78%), Gaps = 5/116 (4%) Strand=Plus/Plus Query 108858 AGAAAACAAATTGGTGGCGG-CGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACG 108916 ||||||||| ||| || ||||| | | || || |||||||||||||||||||||| Sbjct 71835 AGAAAACAAGGCCGTGTCGATCGTTGCCA-TGGGTGAAGGATGGCACAACTACCACCACG 71893 Query 108917 TGTTCCCCTACGACTACAAGGCCGCCGAGTTGGGGAACGACT---TTAATTTCACC 108969 ||||||| | ||||||||||| |||||| || | ||| ||| | ||| ||||| Sbjct 71894 TGTTCCCGTGGGACTACAAGGCGGCCGAGCTGAGCAACTACTCCGTCAATCTCACC 71949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381762470659680