Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20]
2,220 sequences; 136,935,538 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq673 122 8e-23
seq111 118 1e-21
seq122 109 5e-19
seq966 102 8e-17
seq610 96.9 3e-15
>seq673
Length=25255
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||| ||| | ||| | || ||||| || || || ||||| ||
Sbjct 24413 CCACCACGAAGTCGCAGCACAAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 24472
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || ||||| || || ||| |||||| ||||||||||| || ||
Sbjct 24473 AGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 24532
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||||||| ||| ||| ||| | | |||| |||||||| ||||||
Sbjct 24533 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCCGATGGCTCGACC 24592
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| || | || |||||||| || ||||| || |||||||||||
Sbjct 24593 TCGAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 24639
>seq111
Length=461598
Score = 118 bits (130), Expect = 1e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| ||||| || | |||| ||||| ||| | ||| || || || ||||||||||| |||
Sbjct 359649 GCACCACCACGCAGGCGCAGCACCAGATGAAGCGTCGATTCCTTCTGAATATTGTAGTCG 359708
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
|| || || || || ||||| || |||||| |||| | ||||||||||| ||
Sbjct 359709 GACAGAGTACGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGC 359768
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| ||||||||||||||| ||| || ||| | | |||| || |||| ||||
Sbjct 359769 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCG 359828
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || | ||| | || || || || || ||||| || || ||||||||
Sbjct 359829 ACCTCAAGGGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 359878
>seq122
Length=254344
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
|||||| || | || | ||||| || | || ||||| || || || || || |||
Sbjct 68451 TCCACCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCGGA 68510
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
|| || || || || ||||| || || ||| ||||||| ||||||||||| || ||
Sbjct 68511 CAGGGTACGTCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 68570
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| || ||||| | |||| ||| |||| | ||| ||
Sbjct 68571 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGGCTCCAC 68630
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | ||| ||||| |||| || || || || ||||||||
Sbjct 68631 CTCCAGAGTGATCGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 68678
>seq966
Length=353950
Score = 102 bits (112), Expect = 8e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 126885 CTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGC 126944
|||| || || | || | ||| | ||| | || || || ||||| || ||||| |||
Sbjct 452 CTCCCCCACGAAGACGGAGCACTAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGG 393
Query 126945 CCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAG 127004
|| ||| ||| ||| || ||||| ||||||||| |||| | ||||||||||| ||||
Sbjct 392 ACAGCGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAG 333
Query 127005 GTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064
| ||||| ||||| ||| || || ||| | | || | || || | |||||
Sbjct 332 GAATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATTGTATCGGATGGCTCGA 273
Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| || | ||| | || || || ||||| || || || |||||||||||
Sbjct 272 CCTCCAGGGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCAT 224
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
||| || || | || | ||||| ||| | || || || || ||||| ||||| |||
Sbjct 223 TCCTCCACGAAGACGGAGCACCAGATGGAGAGTCGATTCCTTCTGAATGTTGTAGTCGGA 164
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
|| || ||| ||| || ||||| ||||||||| |||| | ||||||||||| |||||
Sbjct 163 CAGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGG 104
Query 127006 TATGCCCTCCTTGTCC 127021
||||| ||||| |||
Sbjct 103 GATGCCTTCCTTATCC 88
>seq610
Length=159711
Score = 96.9 bits (106), Expect = 3e-15
Identities = 163/235 (69%), Gaps = 1/235 (0%)
Strand=Plus/Minus
Query 126879 ATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGT 126938
|||| ||||| || || | |||| |||| ||| | || || || || || || ||||
Sbjct 159578 ATAC-GCTCCCCCACGAAGACGCAGTACCAGATGGAGAGTCGATTCCTTCTGGATGTTGT 159520
Query 126939 AATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGAT 126998
| ||| || || ||| ||| || ||||| ||||||||| |||| | ||||||||||
Sbjct 159519 AGTCGGACAGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGAT 159460
Query 126999 CGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTAC 127058
| ||||| ||||| ||||| ||| || || ||| | | || | || || |
Sbjct 159459 CTGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATG 159400
Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||||| || | || | || || || ||||| || || || |||||||||||
Sbjct 159399 GCTCGACCTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCAT 159345
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
||| || || | || | ||||| ||| | || || || || || || ||||| |||
Sbjct 159344 TCCTCCACGGAGACGGAGCACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGA 159285
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
|| || ||| ||| || ||||| ||||||||| |||| | ||||||||||| |||||
Sbjct 159284 CAGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGG 159225
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||| ||||| ||| || || ||| | | || | || || | ||||||
Sbjct 159224 GATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGAC 159165
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || || || ||||| || || || |||||||||||
Sbjct 159164 CTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCAT 159117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475487604852800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |