Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1047 241 1e-58 seq966 98.7 9e-16 >seq1047 Length=31309 Score = 241 bits (266), Expect = 1e-58 Identities = 1192/1872 (64%), Gaps = 58/1872 (3%) Strand=Plus/Minus Query 122841 TACAAATATTTTGGATACAAAACGTTAGAAAACGGATATTTGaaaaaaaTCGAGGAAAAG 122900 ||||| || ||||| | |||||| || |||| |||| || |||||| ||| ||| Sbjct 18564 TACAATTACTTTGGTTTCAAAACATTGGAAAGATCATATCTGTTAAAAATTAAGGGGAAG 18505 Query 122901 GTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGAC 122960 | | || | ||||| ||||||||||| || ||||| ||| | || || || Sbjct 18504 ATTGTGGAGAGGCCGCAACACATGCTCATGCGTGTTGCTATCGGCATACATGGTGAAGAT 18445 Query 122961 ATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGT 123020 || || || | ||| || ||| ||||| |||| | || || |||||||| Sbjct 18444 ATTGATTCTGCCATCGAGACGTACAATTTGCTGTCAGAGCGATACTTTACGCACGCTTCG 18385 Query 123021 CCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACC 123080 || || |||| || || | || | ||| || |||| || || || ||||||| Sbjct 18384 CCAACCATGTTTGCTGCAGCAACTCAACGGCCGCAACTGTCGTCCTGCTTCCTGCTCACA 18325 Query 123081 TTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCC 123140 || || || |||||| || || || || ||| | | || || ||||| || Sbjct 18324 ATGTCGGACGATAGCATCGAGGGAATTTACGATACTCTTAAACAGTGTGCCTTGATCTCT 18265 Query 123141 AAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATC 123200 |||| | || ||||||||| |||| || ||| | | || | || ||| ||| Sbjct 18264 AAATCGGCTGGTGGCATAGGCCTGAATGTACACTGCATTAGGG----CGAAAGGAACATA 18209 Query 123201 A---GAAGCACCGAC-GGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAA 123256 | || | ||| || || | ||| | | | | |||||||| || |||||||| Sbjct 18208 TATTGCAGGAACGAATGGTATTTCGAACGGTTTAGTACCGATGCTGCGCGTCTACAATAA 18149 Query 123257 CGCCGTGCGGCACGTCGACCAGGGCGGCAA-ACGCAAA--GGCGCGATGGCGATCTATCT 123313 | | || | || ||||| || || || | || | || || | || |||||||| Sbjct 18148 TACTGCACGTTATGTTGACCAAGGAGGTAACAAGCGACCCGGAGCCTTTGCTATCTATCT 18089 Query 123314 AGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGA 123373 || || ||||| | ||||| | || ||||| || ||||| |||| || || Sbjct 18088 GGAGCCATGGCATGGGGATGTATTTGAGTTTTTGGATCTAAAAAAGAACACTGGCAAAGA 18029 Query 123374 AGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACG 123433 ||| || | || |||| ||||| | ||| | || |||||||| |||| || Sbjct 18028 AGAGGTCCGCGCAAGGGACATGTTCTACGCGCTGTGGATTCCTGATTTGTTCATGCAGCG 17969 Query 123434 CGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGA 123493 || ||| | ||| ||||| || ||||| || | ||||| || ||| || Sbjct 17968 TGTGGAAGCCAACGAAATGTGGAGTCTAATGTGCCCTCACGACTGTCCTGGATTGTCGGA 17909 Query 123494 CGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGGT 123553 | || | |||| || | | ||| | ||||||||||| || | | Sbjct 17908 GACATGGGGTGAGGAGTTCGAAAAACTCTACACTGGCTACGAGCGCGAGGGT---CGTTT 17852 Query 123554 TA---GTCAGGTTCCGGCACGTGATTT---GTTCAAATTTATTATCGAAACACAAGTCGA 123607 | |||| || ||||| ||||| |||| | ||||| ||| |||| || || Sbjct 17851 CACCCGTCAAGTAAAGGCACAAGATTTATGGTTCGCA---ATTATAGAATCACAGGTTGA 17795 Query 123608 AACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAA 123667 ||| ||| ||| |||||||| |||||||| || ||||| | || | || ||| || Sbjct 17794 AACTGGAGTGCCTTACATGCTTTACAAAGATGCGTGCAATCGTAAGAGTAACCAGCAAAA 17735 Query 123668 CTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGA 123727 | ||||| || || ||| || || ||| |||||||| | |||||| || Sbjct 17734 TATCGGAACGATCAAGTGTTCAAACCTGTGCACCGAAATTGTAGAATACTCTTCAAAAGA 17675 Query 123728 TCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGT-TGCGTCGAAAACGG-- 123784 | || | || |||||||| |||| |||||| || | || | | | || |||| | | Sbjct 17674 TGAAATTGCTGTGTGTAACCTGGCCTCGATT-GCCTTAAACATGTTTGT-GAAACCCGAT 17617 Query 123785 CG--CTTTTAATTTCCAAACGCTCAAACGCA-TAACAAAAACTGTAGTAAAGAATTTGAA 123841 || | | | ||||| || ||| ||| | | || | |||||||| |||||| | || Sbjct 17616 CGTACATATGATTTCGCAAAGCT-AAAGGAAGTAGCCAAAACTGTTACTAAGAATCTTAA 17558 Query 123842 CAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGC---GCGTTTGTCTAATTTGAA 123898 |||||| |||||| | |||| ||||||| | |||||| ||| | | ||| || Sbjct 17557 CAAAATCATCGATATAAATTATTATCCTGTTCCGGAAGCAAAGCGAT---CCAATATGCG 17501 Query 123899 ACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCAT 123958 ||| | ||| | || | || | ||||| |||| || || || | || ||||| Sbjct 17500 CCACCGTCCGATAGGGATCGGAGTGCAAGGCATGGCAGATGCTTTCATCTTGATGCGCCA 17441 Query 123959 GCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTA 124018 || |||||||| || ||||| || || | ||| ||||| ||||| ||||| | Sbjct 17440 CCCTTACGAAAGTGAAGAAGCCCAGCTGTTGAATCAACAAATGTTTGAAACCATTTACTT 17381 Query 124019 CGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGC 124078 ||| || | || |||||||||||| | || | | || | |||||| || | Sbjct 17380 CGGAGCCCTTGAAGCGAGCTGCGAATTGGCCGCACAGGATGGTCCATACGAATCATATGA 17321 Query 124079 GGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAA 124138 || || || | ||| ||| || | ||||||||||||||| | | || || | Sbjct 17320 TGGAAGTCCAGTTAGCAAAGGAATCCTTCAGTACGACATGTGGGAGAAGAAGCCTACGGA 17261 Query 124139 TTTGTGGGACTGG----AGCGTTTTAAAACAACGCATATCG--ACGCACGGTTTGCGTAA 124192 |||||||| ||| ||| |||||| || |||| | || || || |||| || Sbjct 17260 ATTGTGGGATTGGGCTGAGC---TTAAAAGAA---ATATTGTGACACATGGCGTGCGCAA 17207 Query 124193 CTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGA 124252 || ||| | | ||| |||||||| || | ||||| ||||| | || |||||||| Sbjct 17206 TTCCCTGCTTTTAGCGCCTATGCCGACCGCGTCGACTGCGCAAATACTCGGTAACAACGA 17147 Query 124253 ATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCA 124312 ||| || || || | |||| ||| | ||| || | || | | ||||| ||||| Sbjct 17146 ATCTTTTGAACCATACACTTCAAATGTCTACAATCGTAGGGTACTTTCTGGCGAGTTTCA 17087 Query 124313 AGTGATAAATCATCATTTGGTGGACGA-CTTGGTGGCGTTAAA--TTTGTACGATGAAAA 124369 ||| | |||||||||||| | | || || || | || | | |||||||| Sbjct 17086 AGTAGTGAATCATCATTTGCTAAAAGATCTAACTGAATTGGAACTGTGGGACGATGAA-- 17029 Query 124370 CATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGA 124429 ||| ||| | ||| | || |||| | || || | |||||| | Sbjct 17028 -ATGAAGAACAAGATTCTGGCCCAAAATGGCTCAATACAAAAGATAGAGGAAATTCCGCA 16970 Query 124430 ACACGTCAAGCAA-CTGTACAAAACCGTGTGGGAAATGAAAAATAAACGATTAATTGAAA 124488 |||| || |||| ||||||||||| || ||||| || ||| | || ||| Sbjct 16969 ACACATC-CGCAATCTGTACAAAACGGTCTGGGAGATTTCTGTGAAAACTTGCATCAAAA 16911 Query 124489 TGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGG 124548 |||| | ||||||||| || | || || ||| || ||||| || | ||||| | Sbjct 16910 TGGCGGCCGACCGAGGAGCATTCATTGACCAATCGCAGTCTTTCAATATTCACGTAGCTG 16851 Query 124549 AACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGCGGACTCAAAA 124608 | || | ||||| | || || || | ||| |||| | || || |||| Sbjct 16850 AGCCAAACTACGGTAAACTAACATCAATTCATTTCTACGGCTGGAAGATGGGCCTTAAAA 16791 Query 124609 CGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACA 124668 | || |||||||| ||| | |||||||| || | |||| ||||| || || || |||| Sbjct 16790 CCGGGATGTATTATTTACGTACCAAACCAGCTGTTAATGCGATTCAGTTCACAGTTGACA 16731 Query 124669 AATCTAAACTAC 124680 |||| || |||| Sbjct 16730 AATCGAAGCTAC 16719 >seq966 Length=353950 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| || || || | | ||||||||| || || |||||||||||||| || || ||| Sbjct 451 TCCCCCACGAAGACGGAGCACTAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCG-- 394 Query 45173 GACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 ||| | | || ||| |||| || ||||| ||| | || | || ||||| || || Sbjct 393 GACAGCGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGA 334 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| ||||| ||||| || || | || | || | || ||||| | ||| Sbjct 333 GGAATGCCTTCCTTATCCTGAATCTTAGCCTTCA-CGTTCTCAATTGTATCGGATGGCTC 275 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || | || || || || || || || || ||||| ||||| Sbjct 274 GACCTCCAGGGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCAT 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451990656911200