Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20]
2,220 sequences; 136,935,538 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq1047 241 1e-58
seq966 98.7 9e-16
>seq1047
Length=31309
Score = 241 bits (266), Expect = 1e-58
Identities = 1192/1872 (64%), Gaps = 58/1872 (3%)
Strand=Plus/Minus
Query 122841 TACAAATATTTTGGATACAAAACGTTAGAAAACGGATATTTGaaaaaaaTCGAGGAAAAG 122900
||||| || ||||| | |||||| || |||| |||| || |||||| ||| |||
Sbjct 18564 TACAATTACTTTGGTTTCAAAACATTGGAAAGATCATATCTGTTAAAAATTAAGGGGAAG 18505
Query 122901 GTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGAC 122960
| | || | ||||| ||||||||||| || ||||| ||| | || || ||
Sbjct 18504 ATTGTGGAGAGGCCGCAACACATGCTCATGCGTGTTGCTATCGGCATACATGGTGAAGAT 18445
Query 122961 ATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGT 123020
|| || || | ||| || ||| ||||| |||| | || || ||||||||
Sbjct 18444 ATTGATTCTGCCATCGAGACGTACAATTTGCTGTCAGAGCGATACTTTACGCACGCTTCG 18385
Query 123021 CCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACC 123080
|| || |||| || || | || | ||| || |||| || || || |||||||
Sbjct 18384 CCAACCATGTTTGCTGCAGCAACTCAACGGCCGCAACTGTCGTCCTGCTTCCTGCTCACA 18325
Query 123081 TTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCC 123140
|| || || |||||| || || || || ||| | | || || ||||| ||
Sbjct 18324 ATGTCGGACGATAGCATCGAGGGAATTTACGATACTCTTAAACAGTGTGCCTTGATCTCT 18265
Query 123141 AAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATC 123200
|||| | || ||||||||| |||| || ||| | | || | || ||| |||
Sbjct 18264 AAATCGGCTGGTGGCATAGGCCTGAATGTACACTGCATTAGGG----CGAAAGGAACATA 18209
Query 123201 A---GAAGCACCGAC-GGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAA 123256
| || | ||| || || | ||| | | | | |||||||| || ||||||||
Sbjct 18208 TATTGCAGGAACGAATGGTATTTCGAACGGTTTAGTACCGATGCTGCGCGTCTACAATAA 18149
Query 123257 CGCCGTGCGGCACGTCGACCAGGGCGGCAA-ACGCAAA--GGCGCGATGGCGATCTATCT 123313
| | || | || ||||| || || || | || | || || | || ||||||||
Sbjct 18148 TACTGCACGTTATGTTGACCAAGGAGGTAACAAGCGACCCGGAGCCTTTGCTATCTATCT 18089
Query 123314 AGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGA 123373
|| || ||||| | ||||| | || ||||| || ||||| |||| || ||
Sbjct 18088 GGAGCCATGGCATGGGGATGTATTTGAGTTTTTGGATCTAAAAAAGAACACTGGCAAAGA 18029
Query 123374 AGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACG 123433
||| || | || |||| ||||| | ||| | || |||||||| |||| ||
Sbjct 18028 AGAGGTCCGCGCAAGGGACATGTTCTACGCGCTGTGGATTCCTGATTTGTTCATGCAGCG 17969
Query 123434 CGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGA 123493
|| ||| | ||| ||||| || ||||| || | ||||| || ||| ||
Sbjct 17968 TGTGGAAGCCAACGAAATGTGGAGTCTAATGTGCCCTCACGACTGTCCTGGATTGTCGGA 17909
Query 123494 CGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGGT 123553
| || | |||| || | | ||| | ||||||||||| || | |
Sbjct 17908 GACATGGGGTGAGGAGTTCGAAAAACTCTACACTGGCTACGAGCGCGAGGGT---CGTTT 17852
Query 123554 TA---GTCAGGTTCCGGCACGTGATTT---GTTCAAATTTATTATCGAAACACAAGTCGA 123607
| |||| || ||||| ||||| |||| | ||||| ||| |||| || ||
Sbjct 17851 CACCCGTCAAGTAAAGGCACAAGATTTATGGTTCGCA---ATTATAGAATCACAGGTTGA 17795
Query 123608 AACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAA 123667
||| ||| ||| |||||||| |||||||| || ||||| | || | || ||| ||
Sbjct 17794 AACTGGAGTGCCTTACATGCTTTACAAAGATGCGTGCAATCGTAAGAGTAACCAGCAAAA 17735
Query 123668 CTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGA 123727
| ||||| || || ||| || || ||| |||||||| | |||||| ||
Sbjct 17734 TATCGGAACGATCAAGTGTTCAAACCTGTGCACCGAAATTGTAGAATACTCTTCAAAAGA 17675
Query 123728 TCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGT-TGCGTCGAAAACGG-- 123784
| || | || |||||||| |||| |||||| || | || | | | || |||| | |
Sbjct 17674 TGAAATTGCTGTGTGTAACCTGGCCTCGATT-GCCTTAAACATGTTTGT-GAAACCCGAT 17617
Query 123785 CG--CTTTTAATTTCCAAACGCTCAAACGCA-TAACAAAAACTGTAGTAAAGAATTTGAA 123841
|| | | | ||||| || ||| ||| | | || | |||||||| |||||| | ||
Sbjct 17616 CGTACATATGATTTCGCAAAGCT-AAAGGAAGTAGCCAAAACTGTTACTAAGAATCTTAA 17558
Query 123842 CAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGC---GCGTTTGTCTAATTTGAA 123898
|||||| |||||| | |||| ||||||| | |||||| ||| | | ||| ||
Sbjct 17557 CAAAATCATCGATATAAATTATTATCCTGTTCCGGAAGCAAAGCGAT---CCAATATGCG 17501
Query 123899 ACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCAT 123958
||| | ||| | || | || | ||||| |||| || || || | || |||||
Sbjct 17500 CCACCGTCCGATAGGGATCGGAGTGCAAGGCATGGCAGATGCTTTCATCTTGATGCGCCA 17441
Query 123959 GCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTA 124018
|| |||||||| || ||||| || || | ||| ||||| ||||| ||||| |
Sbjct 17440 CCCTTACGAAAGTGAAGAAGCCCAGCTGTTGAATCAACAAATGTTTGAAACCATTTACTT 17381
Query 124019 CGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGC 124078
||| || | || |||||||||||| | || | | || | |||||| || |
Sbjct 17380 CGGAGCCCTTGAAGCGAGCTGCGAATTGGCCGCACAGGATGGTCCATACGAATCATATGA 17321
Query 124079 GGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAA 124138
|| || || | ||| ||| || | ||||||||||||||| | | || || |
Sbjct 17320 TGGAAGTCCAGTTAGCAAAGGAATCCTTCAGTACGACATGTGGGAGAAGAAGCCTACGGA 17261
Query 124139 TTTGTGGGACTGG----AGCGTTTTAAAACAACGCATATCG--ACGCACGGTTTGCGTAA 124192
|||||||| ||| ||| |||||| || |||| | || || || |||| ||
Sbjct 17260 ATTGTGGGATTGGGCTGAGC---TTAAAAGAA---ATATTGTGACACATGGCGTGCGCAA 17207
Query 124193 CTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGA 124252
|| ||| | | ||| |||||||| || | ||||| ||||| | || ||||||||
Sbjct 17206 TTCCCTGCTTTTAGCGCCTATGCCGACCGCGTCGACTGCGCAAATACTCGGTAACAACGA 17147
Query 124253 ATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCA 124312
||| || || || | |||| ||| | ||| || | || | | ||||| |||||
Sbjct 17146 ATCTTTTGAACCATACACTTCAAATGTCTACAATCGTAGGGTACTTTCTGGCGAGTTTCA 17087
Query 124313 AGTGATAAATCATCATTTGGTGGACGA-CTTGGTGGCGTTAAA--TTTGTACGATGAAAA 124369
||| | |||||||||||| | | || || || | || | | ||||||||
Sbjct 17086 AGTAGTGAATCATCATTTGCTAAAAGATCTAACTGAATTGGAACTGTGGGACGATGAA-- 17029
Query 124370 CATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGA 124429
||| ||| | ||| | || |||| | || || | |||||| |
Sbjct 17028 -ATGAAGAACAAGATTCTGGCCCAAAATGGCTCAATACAAAAGATAGAGGAAATTCCGCA 16970
Query 124430 ACACGTCAAGCAA-CTGTACAAAACCGTGTGGGAAATGAAAAATAAACGATTAATTGAAA 124488
|||| || |||| ||||||||||| || ||||| || ||| | || |||
Sbjct 16969 ACACATC-CGCAATCTGTACAAAACGGTCTGGGAGATTTCTGTGAAAACTTGCATCAAAA 16911
Query 124489 TGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGG 124548
|||| | ||||||||| || | || || ||| || ||||| || | ||||| |
Sbjct 16910 TGGCGGCCGACCGAGGAGCATTCATTGACCAATCGCAGTCTTTCAATATTCACGTAGCTG 16851
Query 124549 AACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGCGGACTCAAAA 124608
| || | ||||| | || || || | ||| |||| | || || ||||
Sbjct 16850 AGCCAAACTACGGTAAACTAACATCAATTCATTTCTACGGCTGGAAGATGGGCCTTAAAA 16791
Query 124609 CGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACA 124668
| || |||||||| ||| | |||||||| || | |||| ||||| || || || ||||
Sbjct 16790 CCGGGATGTATTATTTACGTACCAAACCAGCTGTTAATGCGATTCAGTTCACAGTTGACA 16731
Query 124669 AATCTAAACTAC 124680
|||| || ||||
Sbjct 16730 AATCGAAGCTAC 16719
>seq966
Length=353950
Score = 98.7 bits (108), Expect = 9e-16
Identities = 163/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172
||| || || || | | ||||||||| || || |||||||||||||| || || |||
Sbjct 451 TCCCCCACGAAGACGGAGCACTAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCG-- 394
Query 45173 GACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
||| | | || ||| |||| || ||||| ||| | || | || ||||| || ||
Sbjct 393 GACAGCGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGA 334
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
||||||||||| ||||| ||||| || || | || | || | || ||||| | |||
Sbjct 333 GGAATGCCTTCCTTATCCTGAATCTTAGCCTTCA-CGTTCTCAATTGTATCGGATGGCTC 275
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||| || || || | || || || || || || || || ||||| |||||
Sbjct 274 GACCTCCAGGGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCAT 224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451990656911200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |