Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1047 127 3e-24 seq14 113 7e-20 >seq1047 Length=31309 Score = 127 bits (140), Expect = 3e-24 Identities = 325/495 (66%), Gaps = 0/495 (0%) Strand=Plus/Plus Query 203833 CTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTA 203892 ||||| ||||| || ||||||||||| || || || || || || | | | ||| || Sbjct 16723 CTTCGATTTGTCAACTGTGAACTGAATCGCATTAACAGCTGGTTTGGTACGTAAATAATA 16782 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 ||| ||||| || |||||| ||| ||| ||||| | || || || | ||||| | Sbjct 16783 CATCCCGGTTTTAAGGCCCATCTTCCAGCCGTAGAAATGAATTGATGTTAGTTTACCGTA 16842 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATC 204012 ||| || || || | |||||| || | |||||| |||||| ||||| | | || || Sbjct 16843 GTTTGGCTCAGCTACGTGAATATTGAAAGACTGCGATTGGTCAATGAATGCTCCTCGGTC 16902 Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCT 204072 || ||||| ||||| || ||| ||||||||||| ||||| ||| ||| | | Sbjct 16903 GGCCGCCATTTTGATGCAAGTTTTCACAGAAATCTCCCAGACCGTTTTGTACAGATTGCG 16962 Query 204073 GGTGTGTTGAGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGTCTCAT 204132 | ||||||| || | || || | | || ||||| || | ||||| | | | Sbjct 16963 GATGTGTTGCGGAATTTCCTCTATCTTTTGTATTGAGCCATTTTGGGCCAGAATCTTGTT 17022 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | || | || || |||||| |||| | || || | || || | || | Sbjct 17023 CTTCATTTCATCGTCCCACAGTTCCAATTCAGTTAGATCTTTTAGCAAATGATGATTCAC 17082 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 | ||||| || || || || |||| || || | | || ||| ||||||| || Sbjct 17083 TACTTGAAACTCGCCAGAAAGTACCCTACGATTGTAGACATTTGAAGTGTATGGTTCAAA 17142 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 | |||||||| |||| || || || || || || ||||| || || | ||||| Sbjct 17143 AGATTCGTTGTTACCGAGTATTTGCGCAGTCGACGCGGTCGGCATAGGCGCTAAAAGCAG 17202 Query 204313 GGAGTTGCGCACACC 204327 ||| |||||||| || Sbjct 17203 GGAATTGCGCACGCC 17217 >seq14 Length=264275 Score = 113 bits (124), Expect = 7e-20 Identities = 217/317 (68%), Gaps = 5/317 (2%) Strand=Plus/Plus Query 159755 TCTGCCACAAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAAC 159813 || ||||| || |||||||| || | |||| |||| || || || |||| || || Sbjct 132132 TCCGCCACGAACTCGATGTA-CTGCGACATGAGCTCGCAATTCATACCCAACATATCGAC 132190 Query 159814 GGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGA 159873 || || |||| || ||| ||||||| ||| ||| ||| || || | || | || Sbjct 132191 AGGCAGTGCTTTCGTCAGGAACTCCTGCTCGATCATGACTGCATCACGGATGATATCCGT 132250 Query 159874 GACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTC 159933 || |||| | | || || | | | | ||| |||| ||| || |||||||| Sbjct 132251 TACGCGTTTGCGCGATGGTTTCTGTACCA---GATACTTGAACATGAGACAGGCAAAGTC 132307 Query 159934 GCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGAT 159993 ||| || | || || || || ||||| | ||||||||| | | || |||||||| | Sbjct 132308 GCAATGTAAACCTTCATCGCGCGAGATCAGCTCGTTGGAGAACGTCAGACCCGGCATCAG 132367 Query 159994 CCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCAC 160053 |||||| || ||||| || ||||| ||||| || || || ||||| ||||| || Sbjct 132368 GCCACGCTTCTTTAGCCAGAAGATGGCAGCAAAGCTGCCACTGAAGAAGATACCCTCGAC 132427 Query 160054 GGCCGCAAACGCCACGA 160070 ||| || |||||||||| Sbjct 132428 GGCTGCGAACGCCACGA 132444 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 160213 CGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGC 160272 |||||||||||| ||| || ||||| || || ||||| || |||||| | || Sbjct 132659 CGAGTACATTTCGCTGTGTACGTTTTCCATCGCGATCTGGAAACCATAGAAACAGCGGGC 132718 Query 160273 CTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTC 160332 |||| ||| |||||||| |||||| || | ||||||| | || || | || || Sbjct 132719 CTCCGTCACCTGTACCTCCTGGCTGAACCGTTCAACCAGATTTTCGTTCACAATACCATC 132778 Query 160333 GGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATG 160371 | ||| || ||||| || | |||||| ||||||||||| Sbjct 132779 CGAGGCAGCGAAGAAGGCGAGCACGTGCGAGATGAAATG 132817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795133134443200