Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq966 154 3e-32 seq610 154 3e-32 seq673 150 4e-31 seq111 127 5e-24 seq122 125 2e-23 >seq966 Length=353950 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || ||||||||||| |||||||||| ||||||||| | || || Sbjct 444 CGAAGACGGAGCACTAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGACAGCGTA 385 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||||||||||||| |||||||| ||||||||||| || ||| ||| ||| Sbjct 384 CGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGAATGCCT 325 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||||| || | || || | || || || |||| Sbjct 324 TCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATTGTATCGGATGGCTCGACCTCCAGG 265 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || ||||| ||||| || Sbjct 264 GTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTG 227 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || ||||||||||| ||||| || | ||||||||| | || ||| Sbjct 216 CGAAGACGGAGCACCAGATGGAGAGTCGATTCCTTCTGAATGTTGTAGTCGGACAGAGTA 157 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||||||||||||| |||||||| ||||||||||| || ||| || ||| Sbjct 156 CGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGGATGCCT 97 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||||| || | || || | || || || |||| Sbjct 96 TCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGACCTCCAGA 37 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 ||||| ||||| || || || || ||||| ||||| Sbjct 36 GTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAAT 2 >seq610 Length=159711 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||| || || ||||||||||| ||||| |||| ||||||||| | || ||| Sbjct 159565 CGAAGACGCAGTACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGACAGAGTA 159506 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||||||||||||| |||||||| ||||||||||| || ||| || ||| Sbjct 159505 CGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGGATGCCT 159446 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||||||| || | || || | || || || |||| Sbjct 159445 TCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGACCTCCAGA 159386 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || ||||| ||||| || Sbjct 159385 GTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTG 159348 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || ||||||||||| ||||| |||| ||||||||| | || ||| | ||||| Sbjct 159328 AGCACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCC 159269 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||||||||| |||||||| ||||||||||| || ||| || ||||| ||| Sbjct 159268 TCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGGATGCCTTCCTTATCC 159209 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||||| || | || || | || || || |||| ||||| ||| Sbjct 159208 TGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGACCTCCAGAGTGATGGTC 159149 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| ||||| || Sbjct 159148 TTTCCTGTCAGGGTCTTCACGAAAATCTG 159120 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 199445 TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGA 199504 |||| ||||||||| | | | | |||| ||||||||||||||||||||||| | Sbjct 157329 TGGATGTTGTAGTCGGATATGATACGACCATTCTCCAGCTGCTTTCCGGCGAAGATAATC 157270 Query 199505 CGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACG 199564 || ||||| |||||| || ||||| ||||| | |||||| ||| | | || Sbjct 157269 CGTTGCTGATCCGGATCGATGCCTTCGCGCTCTTCAATCTTACTCTTTATATCTAGTACC 157210 Query 199565 GTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATT 199624 || ||||| | | ||||| | ||||||||| || || || | ||||| || || ||| Sbjct 157209 GTCTCTGTAGGCACAACATCAAGCGTGATCGTTTTCCCGGTTAACGTTTTAACGAAGATT 157150 Query 199625 TG 199626 || Sbjct 157149 TG 157148 >seq673 Length=25255 Score = 150 bits (166), Expect = 4e-31 Identities = 170/227 (75%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| ||| ||||| || || ||||||||||| |||| ||||||||| | | || Sbjct 24419 CGAAGTCGCAGCACAAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTA 24478 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||||||||| ||||||||||| || || ||||| Sbjct 24479 CGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCC 24538 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| |||| |||||| | || || || || | Sbjct 24539 TCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCCGATGGCTCGACCTCGAGT 24598 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||| ||||| || ||||| |||||||| ||||| || |||||| Sbjct 24599 GTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTG---CATTTT 24642 >seq111 Length=461598 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || || || ||||| ||||| || | |||||||| | || ||| Sbjct 359658 CGCAGGCGCAGCACCAGATGAAGCGTCGATTCCTTCTGAATATTGTAGTCGGACAGAGTA 359717 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||| |||||||||||||| || |||||||| ||||||||||| ||||| ||| || Sbjct 359718 CGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGCGGAATGCCC 359777 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| |||| || || | | || || || | Sbjct 359778 TCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGG 359837 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||||||||| ||||| || || || || Sbjct 359838 GTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTG 359875 >seq122 Length=254344 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || ||||||||||| |||| ||| ||||| | || || | ||| ||| Sbjct 68467 AGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCGGACAGGGTACGTCCGTCT 68526 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||||||||| | ||||||||| || || ||| || || ||| Sbjct 68527 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 68586 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||| || | | || || |||| ||||||||| Sbjct 68587 TGGATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGGCTCCACCTCCAGAGTGATCGTC 68646 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || ||||| || || || Sbjct 68647 TTGCCAGTCAACGTCTTCACGAAGATCTG 68675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178888067048740