Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20]
2,220 sequences; 136,935,538 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq966 154 3e-32
seq610 154 3e-32
seq673 150 4e-31
seq111 127 5e-24
seq122 125 2e-23
>seq966
Length=353950
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || || ||||||||||| |||||||||| ||||||||| | || ||
Sbjct 444 CGAAGACGGAGCACTAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGACAGCGTA 385
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| |||||||||||||| |||||||| ||||||||||| || ||| ||| |||
Sbjct 384 CGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGAATGCCT 325
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||||||||| ||||||| || | || || | || || || ||||
Sbjct 324 TCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATTGTATCGGATGGCTCGACCTCCAGG 265
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || || || ||||| ||||| ||
Sbjct 264 GTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTG 227
Score = 145 bits (160), Expect = 2e-29
Identities = 161/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | || || || ||||||||||| ||||| || | ||||||||| | || |||
Sbjct 216 CGAAGACGGAGCACCAGATGGAGAGTCGATTCCTTCTGAATGTTGTAGTCGGACAGAGTA 157
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| |||||||||||||| |||||||| ||||||||||| || ||| || |||
Sbjct 156 CGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGGATGCCT 97
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||||||||| ||||||| || | || || | || || || ||||
Sbjct 96 TCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGACCTCCAGA 37
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623
||||| ||||| || || || || ||||| |||||
Sbjct 36 GTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAAT 2
>seq610
Length=159711
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||| || || ||||||||||| ||||| |||| ||||||||| | || |||
Sbjct 159565 CGAAGACGCAGTACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGACAGAGTA 159506
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| |||||||||||||| |||||||| ||||||||||| || ||| || |||
Sbjct 159505 CGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGGATGCCT 159446
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||||||||| ||||||| || | || || | || || || ||||
Sbjct 159445 TCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGACCTCCAGA 159386
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || || || ||||| ||||| ||
Sbjct 159385 GTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTG 159348
Score = 147 bits (162), Expect = 5e-30
Identities = 158/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || || ||||||||||| ||||| |||| ||||||||| | || ||| | |||||
Sbjct 159328 AGCACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCC 159269
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||||||||||||| |||||||| ||||||||||| || ||| || ||||| |||
Sbjct 159268 TCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGGATGCCTTCCTTATCC 159209
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||||||| || | || || | || || || |||| ||||| |||
Sbjct 159208 TGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGACCTCCAGAGTGATGGTC 159149
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || ||||| ||||| ||
Sbjct 159148 TTTCCTGTCAGGGTCTTCACGAAAATCTG 159120
Score = 89.7 bits (98), Expect = 1e-12
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 199445 TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGA 199504
|||| ||||||||| | | | | |||| ||||||||||||||||||||||| |
Sbjct 157329 TGGATGTTGTAGTCGGATATGATACGACCATTCTCCAGCTGCTTTCCGGCGAAGATAATC 157270
Query 199505 CGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACG 199564
|| ||||| |||||| || ||||| ||||| | |||||| ||| | | ||
Sbjct 157269 CGTTGCTGATCCGGATCGATGCCTTCGCGCTCTTCAATCTTACTCTTTATATCTAGTACC 157210
Query 199565 GTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATT 199624
|| ||||| | | ||||| | ||||||||| || || || | ||||| || || |||
Sbjct 157209 GTCTCTGTAGGCACAACATCAAGCGTGATCGTTTTCCCGGTTAACGTTTTAACGAAGATT 157150
Query 199625 TG 199626
||
Sbjct 157149 TG 157148
>seq673
Length=25255
Score = 150 bits (166), Expect = 4e-31
Identities = 170/227 (75%), Gaps = 3/227 (1%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||||| ||| ||||| || || ||||||||||| |||| ||||||||| | | ||
Sbjct 24419 CGAAGTCGCAGCACAAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTA 24478
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || || ||||||||||| ||||||||||| ||||||||||| || || |||||
Sbjct 24479 CGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCC 24538
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| |||||| |||| |||||| | || || || || |
Sbjct 24539 TCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCCGATGGCTCGACCTCGAGT 24598
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
||||| ||||| || ||||| |||||||| ||||| || ||||||
Sbjct 24599 GTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTG---CATTTT 24642
>seq111
Length=461598
Score = 127 bits (140), Expect = 5e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| || || || || ||||| ||||| || | |||||||| | || |||
Sbjct 359658 CGCAGGCGCAGCACCAGATGAAGCGTCGATTCCTTCTGAATATTGTAGTCGGACAGAGTA 359717
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||| |||||||||||||| || |||||||| ||||||||||| ||||| ||| ||
Sbjct 359718 CGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGCGGAATGCCC 359777
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| |||||| |||| || || | | || || || |
Sbjct 359778 TCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGG 359837
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| |||||||||||||| ||||| || || || ||
Sbjct 359838 GTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTG 359875
>seq122
Length=254344
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| | ||| || ||||||||||| |||| ||| ||||| | || || | ||| |||
Sbjct 68467 AGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCGGACAGGGTACGTCCGTCT 68526
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| ||||||||||| | ||||||||| || || ||| || || |||
Sbjct 68527 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 68586
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| |||| ||| || | | || || |||| |||||||||
Sbjct 68587 TGGATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGGCTCCACCTCCAGAGTGATCGTC 68646
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | || ||||| || || ||
Sbjct 68647 TTGCCAGTCAACGTCTTCACGAAGATCTG 68675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178888067048740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |