Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq673 98.7 6e-16 seq610 95.1 8e-15 seq111 93.3 3e-14 seq122 87.8 1e-12 >seq673 Length=25255 Score = 98.7 bits (108), Expect = 6e-16 Identities = 143/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||||||| | || | || |||||||| || ||||| || Sbjct 24449 TCCTTCTGGATGTTGTAGTCCGAAAGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 24508 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | ||||||||||| |||||| || || || Sbjct 24509 ATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCAC--AT 24566 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| | ||| | ||| || |||| || ||||| || || ||||| || || Sbjct 24567 --TCTCGATGGTGTCCGATGGCTCGACCTCGAGTGTGATGGTCTTGCCGGTGAGCGTTTT 24624 Query 34967 CACAAAGATCTGCATATT 34984 ||| || |||||||| || Sbjct 24625 CACGAAAATCTGCATTTT 24642 >seq610 Length=159711 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || || | || |||| |||||||| ||||| || || Sbjct 159308 TTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAA 159249 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| ||| | || | || ||||| || |||||| || ||| Sbjct 159248 GATAAGACGCTGCTGATCTGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTT 159189 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||| || | ||| || || | || ||||| ||||| || || |||||||| Sbjct 159188 CTCAATCGTATCGGATGGCTCGACCTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCAC 159129 Query 34970 AAAGATCTGCATATTCGTAG 34989 || ||||||||||| |||| Sbjct 159128 GAAAATCTGCATATTGGTAG 159109 >seq111 Length=461598 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| |||||||| || ||||| || || | ||| | || |||||||| || || || || Sbjct 359687 TTCCTTCTGAATATTGTAGTCGGACAGAGTACGTCCGTCTTCCAGCTGCTTGCCAGCGAA 359746 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| || |||| | ||||||||||| ||||| || || | Sbjct 359747 GATAAGACGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC--A 359804 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || |||| || || ||| || || | ||| ||||| || |||||||| || || Sbjct 359805 TTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTGATGGTCTTACCCGTGAGGGTTTTG 359864 Query 34968 ACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 359865 ACGAAGATCTGCAT 359878 >seq122 Length=254344 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||||||||| || ||| | ||| | || ||| Sbjct 68470 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCGGACAGGGTACGTCCGTCTTCC 68529 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || ||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 68530 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 68589 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| | | ||||| | ||| | ||| || || | || || || Sbjct 68590 ATCTTGGCCTTGAC----GTTCTCGATGGTATCCGAAGGCTCCACCTCCAGAGTGATCGT 68645 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || | |||||||| |||||||||||| Sbjct 68646 CTTGCCAGTCAACGTCTTCACGAAGATCTGCATA 68679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324624816632160