Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1047 280 2e-70 >seq1047 Length=31309 Score = 280 bits (310), Expect = 2e-70 Identities = 1187/1867 (64%), Gaps = 50/1867 (3%) Strand=Plus/Plus Query 46973 tttttCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || || || |||| ||| | |||| |||| ||| || |||||||||||||| || Sbjct 16729 TTTGTCAACTGTGAACTGAATCGCATTAACAGCTGGTTTGGTACGTAAATAATACATCCC 16788 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 || || | || | |||| || |||||||| || |||| |||| || | || Sbjct 16789 GGTTTTAAGGCCCATCTTCCAGCCGTAGAAATGAATTGATGTTAGTTTACCGTAGTTTGG 16848 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 || | | |||||||| | ||| || || ||||| ||||| |||| || || || Sbjct 16849 CTCAGCTACGTGAATATTGAAAGACTGCGATTGGTCAATGAATGCTCCTCGGTCGGCCGC 16908 Query 47153 CATATCTAAAATAACCCTTTGTGGTA-TCTCCCATACTGTTTTATAAATTTGTTTAATGT 47211 ||| | | | || || | | ||||||| || ||||| || | | |||| Sbjct 16909 CATTT-TGATGCAAGTTTTCACAGAAATCTCCCAGACCGTTTTGTACAGATTGCGGATGT 16967 Query 47212 CTTCTGGGAGAT----TAGTATTTTGAATAGATCCTCCgtttt---ctataattttgttt 47264 || || | | || | ||||| || || || |||| | | ||| ||||| Sbjct 16968 GTTGCGGAATTTCCTCTA-TCTTTTGTATTGAGCCA---TTTTGGGCCAGAATCTTGTTC 17023 Query 47265 tttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACA 47324 || | ||||| ||| |||| |||||||| ||||| | |||| |||| || Sbjct 17024 TTCATTTCATCGTCCCACAGTTCCAATTCAGTTAGATCTTTTAGCAAATGATGATTCACT 17083 Query 47325 ATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATA 47384 | |||||| || ||||| ||||| ||||| | || | ||| || |||||||| | | Sbjct 17084 ACTTGAAACTCGCCAGAAAGTACCCTACGATTGTAGACATTTGAAGTGTATGGTTCAAAA 17143 Query 47385 GATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAG 47444 ||||| || || || | ||||| ||||| || || || ||||| | || | | | | Sbjct 17144 GATTCGTTGTTACCGAGTATTTGCGCAGTCGACGCGGTCGGCATAGGCGCTAAAAGCAGG 17203 Query 47445 CTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCT 47504 ||| | || |||| | | || | ||||||||| | || Sbjct 17204 GAATTGCGCACGCCATGTGTCACAATATTTCTTTTAAGCTCAGCCCAATCCCACAATTCC 17263 Query 47505 GATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTA 47564 | || | ||| | || || ||||| |||||||| || | ||| |||| | Sbjct 17264 GTAGGCTTCTTCTCCCACATGTCGTACTGAAGGATTCCTTTGCTAACTGGACTTCCATCA 17323 Query 47565 TATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAA 47624 |||| || || ||||| | || || | ||| || || ||||| | || | | Sbjct 17324 TATGATTCGTATGGACCATCCTGTGCGGCCAATTCGCAGCTCGCTTCAAGGGCTCCGAAG 17383 Query 47625 TATATTGTTTCAAATATTTTTATGTTTAGATTCCTTG-CTTCTGATGATTCAAAAGGATA 47683 || || |||||||| |||| | || || | || | ||||| ||| |||| | Sbjct 17384 TAAATGGTTTCAAACATTTGT-TGATTCAACAGCTGGGCTTCTTCACTTTCGTAAGGGTG 17442 Query 47684 NNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGT 47743 || | |||||||| ||||| || || || || || || | || Sbjct 17443 GCGCATCAAGATGAAAGCATCTGCCATGCCTTGCACTCCGATCCCTATCGGACGGTGGCG 17502 Query 47744 TTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAG 47803 |||| || || ||||| || | ||||| | |||||||| || ||||| || || Sbjct 17503 CATATTGGATCGCTTTGCTTCCGGAACAGGATAATAATTTATATCGATGATTTTGTTAAG 17562 Query 47804 ANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATT--- 47860 | | | ||| ||| || |||||| | | || Sbjct 17563 ATTCTTAGTAACAGTTTTGGCTACTTCCTTTAGCTTTGCGAAATCATATGTACGATCGGG 17622 Query 47861 TATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT--TTGGA 47918 | | |||||| | || | || || || || || ||||| ||||| | |||| || || Sbjct 17623 TTTCACAAACATGTTTAAGGCAATCGAGGCCAGGTTACACACAGCAATTTCATCTTTTGA 17682 Query 47919 TTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGA 47978 ||||| | || ||||| | || || || ||| ||||| || || | |||||| Sbjct 17683 AGAGTAT--TCTACAATTTCGGTGCACAGGTTTGAACACTTGATCGTTCCGATATTTTGC 17740 Query 47979 TGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATC 48038 || ||| | || || || || ||||||||||| |||| ||||||||| | | Sbjct 17741 TGGTTACTCTTACGATTGCACGCATCTTTGTAAAGCATGTAAGGCACTCCAGTTTCAACC 17800 Query 48039 TGAGATTCAATGATAGATTTCCAAACAGTCCTA-GCCTTTA--TAACAGCTCTAGCTTTA 48095 || ||||| || || | ||| | | || | ||||||| | || | | | | | Sbjct 17801 TGTGATTCTATAATTGCGAACCATAAA-TCTTGTGCCTTTACTTGACGGGTGAAACG--A 17857 Query 48096 TTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACAT-TATCTAA 48154 || | ||||| ||| || | || || || || || || ||| | || | Sbjct 17858 CCCTCGCGCTCGTAGCCAGTGTAGAGTTTTTCGAACTCCTCACCC----CATGTCTCCGA 17913 Query 48155 C---CCAGGACATTCATTAGGACACATCAATGACCAATCCTCAT--CATT---TTTTACT 48206 | |||||||| || | ||| ||||| | ||| ||| ||| | || || || Sbjct 17914 CAATCCAGGACAGTCGTGAGGGCACATTA--GAC---TCCACATTTCGTTGGCTTCCACA 17968 Query 48207 CTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCT 48266 | ||| || | ||| || ||||| || || || | ||||| | | | ||| Sbjct 17969 CGCTGCATGAACAAATCAGGAATCCACAGCGCGTAGAACATGTCCCTTGCGCGGACCTCT 18028 Query 48267 TCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCT 48326 || |||||| | ||| |||| || || | ||| || | || ||| |||||||||| || Sbjct 18029 TCTTTGCCAGTGTTCTTTTTTAGATCCAAAAACTCAAATACATCCCCATGCCATGGCTCC 18088 Query 48327 AAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTA 48386 | ||| || || | | || ||||| || ||||||||||| || | ||| | |||||| Sbjct 18089 AGATAGATAGCAAAGGCTCCGGGTCGCTTGTTACCTCCTTGGTCAACATAACGTGCAGTA 18148 Query 48387 TTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATA 48446 || || || || | | ||| || || | ||| || || |||||||| ||||| | |||| Sbjct 18149 TTATTGTAGACGCGCAGCATCGGTACTAAACCGTTCGAAATACCATTCGTTCCTGCAATA 18208 Query 48447 TAACTTCCACTAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAG 48504 || |||| | || || || | | ||| | ||||| ||||| ||| ||||| Sbjct 18209 TATGTTCCTTTCGCCCTAATGCAGTGTACATTCAGG--CCTATGCCACCAGCCGATTTAG 18266 Query 48505 ATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATAT 48564 | || | |||||| ||||||| ||||| |||||||| || || ||||| || ||| Sbjct 18267 AGATCAAGGCACACTGTTTAAGAGTATCGTAAATTCCCTCGATGCTATCGTCCGACATTG 18326 Query 48565 TTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAG 48624 | | || || || |||| |||||| | |||| ||| | ||| | ||||| | Sbjct 18327 TGAGCAGGAAGCAGGACGACAGTTGCGGCCGTTGAGTTGCTGCAGCAAACATGGTTGGCG 18386 Query 48625 ATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATAT 48684 | || || |||| || |||||| | ||| || || || || || ||||||| |||| Sbjct 18387 AAGCGTGCGTAAAGTATCGCTCTGACAGCAAATTGTACGTCTCGATGGCAGAATCAATAT 18446 Query 48685 CCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTT 48744 | |||||| || |||| |||||||| | ||| | ||| || || || ||||| | Sbjct 18447 CTTCACCATGTATGCCGATAGCAACACGCATGAGCATGTGTTGCGGCCTCTCCACAATCT 18506 Query 48745 TGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATG 48804 | || ||||| || ||||||||| ||||||||||||| |||||||| || ||||| Sbjct 18507 TCCCCTTAATTTTTAACAGATATGATCTTTCCAATGTTTTGAAACCAAAGTAATTGTAAC 18566 Query 48805 AAAAGTC 48811 |||||| Sbjct 18567 CAAAGTC 18573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562093201480800