Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq50 190 2e-42 seq299 109 4e-18 seq934 102 7e-16 >seq50 Length=143579 Score = 190 bits (210), Expect = 2e-42 Identities = 545/827 (66%), Gaps = 12/827 (1%) Strand=Plus/Minus Query 551790 GGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGTATCATGGTGTGTTGAA 551849 || ||| | ||||| || || |||||||| ||||| || |||| ||| | ||| ||| Sbjct 57105 GGCGATACACATCTAGGAGGAGAAGATTTCGATAACCGAATGGTCTCACATTTTGTGGAA 57046 Query 551850 GATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAA--AGCTCTTCGTCGTC 551907 || |||||||| || || || || | || || | | || ||| | ||||||| Sbjct 57045 GAGTTTAAACGTAAGAATAAGAAGGACATCTCAAC--CAACAAACGAGCATTGCGTCGTC 56988 Query 551908 TAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTG 551967 | | || ||||| ||| | || || || || | ||| | || || | | |||| Sbjct 56987 TGCGTACGGCTTGTGAACGTGCGAAGCGCACTTTGTCAGCATCAACCCAGGCAAGCATTG 56928 Query 551968 AAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTG 552027 || | ||||| | || || || ||||||| | || | || |||| ||| |||| Sbjct 56927 AAATCGATTCGCTTTTCGAAGGGATTGATTTCTACACTTCGATGACGAGAGCCCGTTTTG 56868 Query 552028 AAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAG 552087 |||| | ||| ||| | || | | || || |||||||| | ||| || | | Sbjct 56867 AAGAACTCAATTCAGATTTGTTCCGTGACACGATGGAACCAGTGGCTAAAGCCCTACGGG 56808 Query 552088 ATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAA 552147 | | ||||| |||||| || |||| || || || | |||||||| || || | | Sbjct 56807 ACGCCAAGATGGATAAAGGTAATATACACGACATAGTTTTGGTTGGTGGTTCAACTCGGA 56748 Query 552148 TTCCTAAAATTCGCGAAA--TGTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAG 552205 |||| || | | |||| | | || || || |||||| || |||| ||| || Sbjct 56747 TTCCGAAGGTACA-GAAACTTCTGCAGGATTTCTT-CAATGGGAAGGAATTGAATAAATC 56690 Query 552206 TGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCT-G 552264 | || || ||||| ||||| || || ||||| ||| | ||||| || || ||| | | Sbjct 56689 CATCAACCCCGATGAAGCTGTCGCATACGGTGCTGCAGTACAAGCGGCAAT-CTTGCAAG 56631 Query 552265 GACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTG 552324 | | ||| || | || || | | | | ||||| || || || || | | Sbjct 56630 GTGATACTTCGGAGGCGGTCCAGGATTTACTTTTGTTGGATGTCACGCCACTGTCATTAG 56571 Query 552325 GTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTT 552384 | | ||||| | |||||| | ||||| ||| ||| | ||||||| || || || Sbjct 56570 GAATCGAAACGGCTGGAGGAGTAATGACCGTTCTGATCAAGCGAAATACCACGATACCGA 56511 Query 552385 GTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAA 552444 || || | | ||| |||| || || || |||||| ||| ||| |||||| Sbjct 56510 CGAAGCAAACCCAAACATTCACTACCTACTCGGACAATCAACCTGGCGTTCTGATTCAAG 56451 Query 552445 TTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGG-TACTTTTAATTTA 552503 | |||||||||||| | | || ||||| || |||| ||||| | ||| || | | Sbjct 56450 TCTTTGAAGGAGAACGGGCCATGACGAAAGACAACAATCTTCTTGGAAAATTTGAACTCA 56391 Query 552504 GAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGAT 552563 | |||||||| |||||||| || ||||| || || |||||||| || |||||||| ||| Sbjct 56390 G-TGGTATTCCACCTGCTCCGCGCGGAGTGCCACAGATTGAAGTCACATTCGATATTGAT 56332 Query 552564 GCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATCTAGCAACAA 552610 ||||| || || ||||||| ||||| ||| ||||| | ||||| Sbjct 56331 GCCAACGGTATCATGAATGTATCTGCTATTGAGAAATCGACTAACAA 56285 Score = 105 bits (116), Expect = 5e-17 Identities = 136/186 (73%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||||| || || || ||| ||||| || || | || |||| || ||||| Sbjct 57828 GGCATTGATTTGGGGACGACGTATTCGTGTGTAGGAGTGTTCCAGCATGGAAAGGTTGAT 57769 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 |||||||| ||||||||||| || | || || ||||||||||| |||| || || || Sbjct 57768 ATTATTGCGAATGATCAAGGCAATCGGACAACACCATCTTATGTGGCTTTTACCGATACC 57709 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACCAATACTA 550175 || | | ||||||||||||| ||| |||||| || || ||||| | ||||| | Sbjct 57708 GAGCGGCTTATTGGTGATGCAGCCAAAAATCAAGTAGCAATG--AATCCAAATAATACCA 57651 Query 550176 TTTTTG 550181 |||||| Sbjct 57650 TTTTTG 57645 >seq299 Length=69886 Score = 109 bits (120), Expect = 4e-18 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 930664 TTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACCA 930723 ||||||||||||| || || || || ||||||||||| |||| || || || || || | Sbjct 6005 TTGATTTTTCTTCGCCCAACATCGCTAAAGAAATGCACGTTGGGCACTTACGGTCCACAA 5946 Query 930724 TTATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAGTAAAGTTCATCGAGTCA 930783 | || ||||| ||| | || |||| ||||| || || | ||| ||| ||| Sbjct 5945 TAATAGGAGATTCTATTTGCCGATTTCTTGAATTTTTGCGACACGATGTTTTGCGAATCA 5886 Query 930784 ATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 930826 ||||||| ||||||||||||||||| ||||||||| | || || Sbjct 5885 ATCATATCGGTGATTGGGGAACACAGTTTGGTATGCTTATCGC 5843 >seq934 Length=88778 Score = 102 bits (112), Expect = 7e-16 Identities = 179/258 (69%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||| | || || || || || || ||||| |||| || |||| || |||||| Sbjct 35520 GGTATTGATCTGGGTACGACCTACAGCTGCGTTGGAGTTTTCCAGCATGGCAAGGTTGAA 35579 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 ||||||||||| || || || ||| | || || || || || ||| | ||||| || || Sbjct 35580 ATTATTGCCAACGACCAGGGCAACCGCACCACCCCGTCCTACGTTGCCTTCACCGACACC 35639 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACCAATACT 550174 || | | | | || ||||| || ||| | || |||| || || || ||||| || Sbjct 35640 GAGCGTCTGATCGGCGATGCCGCCAAAAACCAGGTGGCCA-TG--AACCCGACCAACACA 35696 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 || || || || || || || || ||| | | || | ||| | | | ||||| || Sbjct 35697 ATCTTCGACGCCAAGCGGTTGATCGGACGCAAGTTCGACGATCCTGCCATCCAGGCCGAC 35756 Query 550235 ATGAAGCATTGGCCTTTC 550252 |||||||| ||||| ||| Sbjct 35757 ATGAAGCACTGGCCATTC 35774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029178596387800