Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20]
2,220 sequences; 136,935,538 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq966 98.7 8e-16
seq111 98.7 8e-16
seq56 96.9 3e-15
seq122 95.1 1e-14
>seq966
Length=353950
Score = 98.7 bits (108), Expect = 8e-16
Identities = 186/272 (68%), Gaps = 4/272 (1%)
Strand=Plus/Minus
Query 101211 AATATCATTTTTATTTAATATACTAGACATTTCCTCCTCTTAAACGTAAAACTAAATGAA 101270
||| ||||||| ||| || || || || ||| || | | ||| | |||| ||| |
Sbjct 478 AATCTCATTTT-ATTCAAGTTAATACAC---TCCCCCACGAAGACGGAGCACTAGATGGA 423
Query 101271 GGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTAC 101330
| || ||||| ||||| || ||||| |||| | || | |||| |||| ||||| |
Sbjct 422 GAGTCGATTCCTTTTGGATGTTGTAGTCGGACAGCGTACGACCATCCTCCAGCTGCTTTC 363
Query 101331 CTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTT 101390
| || || || | |||||| ||||| || ||||||||||| ||||| ||||| || |
Sbjct 362 CAGCGAAGATAAGACGCTGCTGATCTGGAGGAATGCCTTCCTTATCCTGAATCTTAGCCT 303
Query 101391 TTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAG 101450
| || | || | || || || | || || || || |||| || || || || | |
Sbjct 302 TCACGTTCTCAATTGTATCGGATGGCTCGACCTCCAGGGTGATGGTCTTTCCTGTCAGGG 243
Query 101451 TTTTTACAAATATCTGCATGGTTACGCGAAGA 101482
| || || || |||||||| | | ||||||
Sbjct 242 TCTTCACGAAAATCTGCATTCCTCCACGAAGA 211
>seq111
Length=461598
Score = 98.7 bits (108), Expect = 8e-16
Identities = 146/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
|||||| || ||||| || || |||||||| |||| | ||| | | || |||| ||
Sbjct 359675 ATGAAGCGTCGATTCCTTCTGAATATTGTAGTCGGACAGAGTACGTCCGTCTTCCAGCTG 359734
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
||| || || || || | |||||| ||||| ||||||||||| || || || || || ||
Sbjct 359735 CTTGCCAGCGAAGATAAGACGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTT 359794
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| ||| | || | || || || | || || ||||| |||| || || || ||
Sbjct 359795 GGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTGATGGTCTTACCCGT 359854
Query 101446 TAAAGTTTTTACAAATATCTGCATGGT 101472
| ||||| || || |||||||| ||
Sbjct 359855 GAGGGTTTTGACGAAGATCTGCATCGT 359881
>seq56
Length=464437
Score = 96.9 bits (106), Expect = 3e-15
Identities = 298/453 (66%), Gaps = 6/453 (1%)
Strand=Plus/Minus
Query 13651 ATTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCG 13710
|| ||| || || || || |||||| ||||||||| || || || ||| | || ||
Sbjct 139865 ATCGAACTTACGCTTGCAGCCTTCATAATTCATGTAGCGGATCTTGCCAAAAATCTCACG 139806
Query 13711 CTCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTT 13770
||| |||| | |||| || | || || ||||||||||||||| | || |||||
Sbjct 139805 CTCTTTCCAACCCTGATCATGGATGCCAGCGATCGACCACATGCAACCGACGTATCCGTT 139746
Query 13771 GGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCAC 13830
|||||||| |||||||| || | ||||||| || || || | | ||| |
Sbjct 139745 CGGATCGCGCCCATCCAAGTTGAAGCGATCGTTGAGGTAGATAGCAGTCTCGAGCGCCTC 139686
Query 13831 TGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGTG 13890
| || || ||| ||| || | || || || ||||| || || | || | | |||||
Sbjct 139685 TTCGGGTGATTTAGTCCACTCGAGGATCTTCTTGGCCCAGTACATGCGCAAAAACCCGTG 139626
Query 13891 CATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACAATATGTCATGAGTTTC 13950
||| ||||||| | | | ||| ||| || | |||||||| || || ||||
Sbjct 139625 CATCTTGCCTTCCTTCACCATCTGCAACTGGGCCGAGTTCCACAGATCATCGTGGGTTTT 139566
Query 13951 GGAATTTTCTAATTCTCTTCTATTGTAACAATATTCCCGGCCTTCGTTTGC-ATGCAGAC 14009
| |||| | ||| | |||| || ||| | || | || ||||| ||| |
Sbjct 139565 CGCCGTTTCCAGTTCCTCGCGTGTGTAGCAGTATACGCGCCGATC-TTTGCGATG-ATCA 139508
Query 14010 TCAA-CGTTTCTTTAGCCCAATCAGGCGC-GCCTTCAAACCGATCATAATTGATGTTGTA 14067
|||| ||||| ||||||||| ||| |||| | | | || || || |||||||
Sbjct 139507 TCAAGCGTTTTGCGAGCCCAATCGTACGCTCCCTTGAGATTG-TCGTAGTTTTTGTTGTA 139449
Query 14068 ATAGCAAAAGTTGTCTGCCAATTCTCGTCGAAC 14100
| | |||||||| || |||| || || || ||
Sbjct 139448 AAAACAAAAGTTATCGGCCAGCTCGCGGCGTAC 139416
>seq122
Length=254344
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299
||||| || | | ||| | || || || ||||| || || || || || || || |||
Sbjct 68449 TTTCCACCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCG 68508
Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359
| | || | | || |||| ||||| || || || ||||||||||| ||||| ||
Sbjct 68509 GACAGGGTACGTCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGG 68568
Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419
|||||||| || || || || || || || || | || | || || || | |||
Sbjct 68569 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGGCTCC 68628
Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || ||||||| ||| ||||| || || || || || || ||||||||
Sbjct 68629 ACCTCCAGAGTGATCGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 68678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396267678192540
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |