Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq966 98.7 8e-16 seq111 98.7 8e-16 seq56 96.9 3e-15 seq122 95.1 1e-14 >seq966 Length=353950 Score = 98.7 bits (108), Expect = 8e-16 Identities = 186/272 (68%), Gaps = 4/272 (1%) Strand=Plus/Minus Query 101211 AATATCATTTTTATTTAATATACTAGACATTTCCTCCTCTTAAACGTAAAACTAAATGAA 101270 ||| ||||||| ||| || || || || ||| || | | ||| | |||| ||| | Sbjct 478 AATCTCATTTT-ATTCAAGTTAATACAC---TCCCCCACGAAGACGGAGCACTAGATGGA 423 Query 101271 GGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTAC 101330 | || ||||| ||||| || ||||| |||| | || | |||| |||| ||||| | Sbjct 422 GAGTCGATTCCTTTTGGATGTTGTAGTCGGACAGCGTACGACCATCCTCCAGCTGCTTTC 363 Query 101331 CTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTT 101390 | || || || | |||||| ||||| || ||||||||||| ||||| ||||| || | Sbjct 362 CAGCGAAGATAAGACGCTGCTGATCTGGAGGAATGCCTTCCTTATCCTGAATCTTAGCCT 303 Query 101391 TTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAG 101450 | || | || | || || || | || || || || |||| || || || || | | Sbjct 302 TCACGTTCTCAATTGTATCGGATGGCTCGACCTCCAGGGTGATGGTCTTTCCTGTCAGGG 243 Query 101451 TTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 | || || || |||||||| | | |||||| Sbjct 242 TCTTCACGAAAATCTGCATTCCTCCACGAAGA 211 >seq111 Length=461598 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||| || ||||| || || |||||||| |||| | ||| | | || |||| || Sbjct 359675 ATGAAGCGTCGATTCCTTCTGAATATTGTAGTCGGACAGAGTACGTCCGTCTTCCAGCTG 359734 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || || | |||||| ||||| ||||||||||| || || || || || || Sbjct 359735 CTTGCCAGCGAAGATAAGACGCTGCTGATCCGGCGGAATGCCCTCCTTGTCCTGGATCTT 359794 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | || || || | || || ||||| |||| || || || || Sbjct 359795 GGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTGATGGTCTTACCCGT 359854 Query 101446 TAAAGTTTTTACAAATATCTGCATGGT 101472 | ||||| || || |||||||| || Sbjct 359855 GAGGGTTTTGACGAAGATCTGCATCGT 359881 >seq56 Length=464437 Score = 96.9 bits (106), Expect = 3e-15 Identities = 298/453 (66%), Gaps = 6/453 (1%) Strand=Plus/Minus Query 13651 ATTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCG 13710 || ||| || || || || |||||| ||||||||| || || || ||| | || || Sbjct 139865 ATCGAACTTACGCTTGCAGCCTTCATAATTCATGTAGCGGATCTTGCCAAAAATCTCACG 139806 Query 13711 CTCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTT 13770 ||| |||| | |||| || | || || ||||||||||||||| | || ||||| Sbjct 139805 CTCTTTCCAACCCTGATCATGGATGCCAGCGATCGACCACATGCAACCGACGTATCCGTT 139746 Query 13771 GGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCAC 13830 |||||||| |||||||| || | ||||||| || || || | | ||| | Sbjct 139745 CGGATCGCGCCCATCCAAGTTGAAGCGATCGTTGAGGTAGATAGCAGTCTCGAGCGCCTC 139686 Query 13831 TGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCGTG 13890 | || || ||| ||| || | || || || ||||| || || | || | | ||||| Sbjct 139685 TTCGGGTGATTTAGTCCACTCGAGGATCTTCTTGGCCCAGTACATGCGCAAAAACCCGTG 139626 Query 13891 CATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACAATATGTCATGAGTTTC 13950 ||| ||||||| | | | ||| ||| || | |||||||| || || |||| Sbjct 139625 CATCTTGCCTTCCTTCACCATCTGCAACTGGGCCGAGTTCCACAGATCATCGTGGGTTTT 139566 Query 13951 GGAATTTTCTAATTCTCTTCTATTGTAACAATATTCCCGGCCTTCGTTTGC-ATGCAGAC 14009 | |||| | ||| | |||| || ||| | || | || ||||| ||| | Sbjct 139565 CGCCGTTTCCAGTTCCTCGCGTGTGTAGCAGTATACGCGCCGATC-TTTGCGATG-ATCA 139508 Query 14010 TCAA-CGTTTCTTTAGCCCAATCAGGCGC-GCCTTCAAACCGATCATAATTGATGTTGTA 14067 |||| ||||| ||||||||| ||| |||| | | | || || || ||||||| Sbjct 139507 TCAAGCGTTTTGCGAGCCCAATCGTACGCTCCCTTGAGATTG-TCGTAGTTTTTGTTGTA 139449 Query 14068 ATAGCAAAAGTTGTCTGCCAATTCTCGTCGAAC 14100 | | |||||||| || |||| || || || || Sbjct 139448 AAAACAAAAGTTATCGGCCAGCTCGCGGCGTAC 139416 >seq122 Length=254344 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 ||||| || | | ||| | || || || ||||| || || || || || || || ||| Sbjct 68449 TTTCCACCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCG 68508 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | | || | | || |||| ||||| || || || ||||||||||| ||||| || Sbjct 68509 GACAGGGTACGTCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGG 68568 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 |||||||| || || || || || || || || | || | || || || | ||| Sbjct 68569 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGGCTCC 68628 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||||| ||| ||||| || || || || || || |||||||| Sbjct 68629 ACCTCCAGAGTGATCGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 68678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396267678192540