Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq196 156 3e-33 seq111 114 1e-20 seq122 93.3 3e-14 seq673 87.8 1e-12 >seq196 Length=65403 Score = 156 bits (172), Expect = 3e-33 Identities = 223/314 (71%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 8990 ATTAATTAGTACCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAG 9049 || |||| || || || || ||||| ||||| || || | ||| || || |||| Sbjct 36650 ATCAATTGGTGCCCGTGGAACCAAATCCTCCTGAGCCACGTTCGGTATCGGTAAGCGAAG 36709 Query 9050 TAACCTCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCC 9109 | |||| |||| ||| ||| || | ||| ||||| ||||| || || | || | Sbjct 36710 GCAGCTCTTCCAGCTCGGGGTAAGCTATCTTTTCGCAAATGAATTGGGCGATACGATCGC 36769 Query 9110 CCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCC 9169 |||| || || | || ||| ||| ||| ||||||||||| || || ||||| || | Sbjct 36770 CCTTCTTGACCTCGAAAGCTGCCTCGCCATGGTTGAACAGCACAACACCGACGTTTCCGC 36829 Query 9170 TGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAG 9229 ||||| || || | || || || || ||||||||||||| || || || ||||| | Sbjct 36830 GATAATCTTCGTCAACTACTCCGGCTCCGACGTCGATGAAGTTTTTCACTGCCAGTCCGG 36889 Query 9230 AGCGGGGCGCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGA 9289 | || ||||| | || |||||||||||| |||| | |||||| | | ||||||||| | Sbjct 36890 AACGAGGCGCCACCCGGCCGTAGCATCCCTCCGGAACCTGCACCTGAATGTCGGTCATCA 36949 Query 9290 CCAGCCCCTTGCCG 9303 ||||| ||||||| Sbjct 36950 CCAGCAGCTTGCCG 36963 >seq111 Length=461598 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| ||||| || || ||||||||||| || || ||| | || Sbjct 359661 AGGCGCAGCACCAGATGAAGCGTCGATTCCTTCTGAATATTGTAGTCGGACAGAGTACGT 359720 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| || || || || || ||||| ||||||| |||| ||||||| Sbjct 359721 CCGTCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGCGGAATGCCCTCC 359780 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | || Sbjct 359781 TTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTG 359840 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGT 48771 || || || ||||| | ||||| || || ||||||||||||| Sbjct 359841 ATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCGTGT 359883 >seq122 Length=254344 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || || || || || || || || | || |||| ||| Sbjct 68470 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCGGACAGGGTACGTCCGTCTTCC 68529 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || |||| ||||| ||||| | ||||| |||||||||||| Sbjct 68530 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 68589 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | | || || | ||||||||||| || ||||| || Sbjct 68590 ATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGGCTCCACCTCCAGAGTGATCGTCTTG 68649 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || || || |||||||| Sbjct 68650 CCAGTCAACGTCTTCACGAAGATCTGCAT 68678 >seq673 Length=25255 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||| | ||| || || ||| || || || ||||| || || || | || Sbjct 24422 AGTCGCAGCACAAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGG 24481 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || ||||| ||||| ||||| | ||| | |||||| Sbjct 24482 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCC 24541 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | || Sbjct 24542 TTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCCGATGGCTCGACCTCGAGTGTG 24601 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||||| || ||||||||||| Sbjct 24602 ATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 24639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380927293257060