Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20]
2,220 sequences; 136,935,538 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq196 156 3e-33
seq111 114 1e-20
seq122 93.3 3e-14
seq673 87.8 1e-12
>seq196
Length=65403
Score = 156 bits (172), Expect = 3e-33
Identities = 223/314 (71%), Gaps = 0/314 (0%)
Strand=Plus/Plus
Query 8990 ATTAATTAGTACCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAG 9049
|| |||| || || || || ||||| ||||| || || | ||| || || ||||
Sbjct 36650 ATCAATTGGTGCCCGTGGAACCAAATCCTCCTGAGCCACGTTCGGTATCGGTAAGCGAAG 36709
Query 9050 TAACCTCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCC 9109
| |||| |||| ||| ||| || | ||| ||||| ||||| || || | || |
Sbjct 36710 GCAGCTCTTCCAGCTCGGGGTAAGCTATCTTTTCGCAAATGAATTGGGCGATACGATCGC 36769
Query 9110 CCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCC 9169
|||| || || | || ||| ||| ||| ||||||||||| || || ||||| || |
Sbjct 36770 CCTTCTTGACCTCGAAAGCTGCCTCGCCATGGTTGAACAGCACAACACCGACGTTTCCGC 36829
Query 9170 TGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAG 9229
||||| || || | || || || || ||||||||||||| || || || ||||| |
Sbjct 36830 GATAATCTTCGTCAACTACTCCGGCTCCGACGTCGATGAAGTTTTTCACTGCCAGTCCGG 36889
Query 9230 AGCGGGGCGCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGA 9289
| || ||||| | || |||||||||||| |||| | |||||| | | ||||||||| |
Sbjct 36890 AACGAGGCGCCACCCGGCCGTAGCATCCCTCCGGAACCTGCACCTGAATGTCGGTCATCA 36949
Query 9290 CCAGCCCCTTGCCG 9303
||||| |||||||
Sbjct 36950 CCAGCAGCTTGCCG 36963
>seq111
Length=461598
Score = 114 bits (126), Expect = 1e-20
Identities = 159/223 (71%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| ||||| ||| ||||| || || ||||||||||| || || ||| | ||
Sbjct 359661 AGGCGCAGCACCAGATGAAGCGTCGATTCCTTCTGAATATTGTAGTCGGACAGAGTACGT 359720
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| |||| |||||| || || || || || ||||| ||||||| |||| |||||||
Sbjct 359721 CCGTCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGCGGAATGCCCTCC 359780
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | | || || | ||| ||||| | ||
Sbjct 359781 TTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTG 359840
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGT 48771
|| || || ||||| | ||||| || || |||||||||||||
Sbjct 359841 ATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCGTGT 359883
>seq122
Length=254344
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || || ||| || || || || || || || || | || |||| |||
Sbjct 68470 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCGGACAGGGTACGTCCGTCTTCC 68529
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||| ||||| || |||| ||||| ||||| | ||||| ||||||||||||
Sbjct 68530 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 68589
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| || || | | | || || | ||||||||||| || ||||| ||
Sbjct 68590 ATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGGCTCCACCTCCAGAGTGATCGTCTTG 68649
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| || || || || ||||||||
Sbjct 68650 CCAGTCAACGTCTTCACGAAGATCTGCAT 68678
>seq673
Length=25255
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| ||| | ||| || || ||| || || || ||||| || || || | ||
Sbjct 24422 AGTCGCAGCACAAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGG 24481
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| |||| |||||| ||||| || ||||| ||||| ||||| | ||| | ||||||
Sbjct 24482 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCC 24541
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | | || || | ||| ||||| | ||
Sbjct 24542 TTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCCGATGGCTCGACCTCGAGTGTG 24601
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || | ||||| || |||||||||||
Sbjct 24602 ATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCAT 24639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380927293257060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |