Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq14 140 6e-28 seq1047 96.9 6e-15 >seq14 Length=264275 Score = 140 bits (154), Expect = 6e-28 Identities = 289/427 (68%), Gaps = 5/427 (1%) Strand=Plus/Plus Query 47941 GCCCATCTGTTCCAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGAT 48000 ||||| || ||| ||| ||||||| ||| |||||||||| | |||||||| | Sbjct 132110 GCCCAACTCCACCAACAGACGATCCGCCACGAACTCGATGTACTGCGACATGAGCTCGCA 132169 Query 48001 GTTCATGCCTATGAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCAC 48060 ||||| || | | || |||| || || || || ||||||| ||| ||| || Sbjct 132170 ATTCATACCCAACATATCGACAGGCAGTGCTTTCGTCAGGAACTCCTGCTCGATCATGAC 132229 Query 48061 GGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGG- 48119 || || | | || | | | ||||| || ||||| | ||| | |||| Sbjct 132230 TGCATCACGGATGATATCCGTTACGCGTTTGCGCGATGGTTTCTGTACCAGATACTTGAA 132289 Query 48120 CATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGG 48179 ||| ||| ||||||||||| | || || ||||| || || ||| ||| |||||| Sbjct 132290 CAT-GAGA---CAGGCAAAGTCGCAATGTAAACCTTCATCGCGCGAGATCAGCTCGTTGG 132345 Query 48180 AGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGC 48239 |||| ||||| ||||| | || | || || |||||||| || || || || || Sbjct 132346 AGAACGTCAGACCCGGCATCAGGCCACGCTTCTTTAGCCAGAAGATGGCAGCAAAGCTGC 132405 Query 48240 CAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGT 48299 || ||||||||| ||||| || || |||||||| || | ||| ||| | ||| | Sbjct 132406 CACTGAAGAAGATACCCTCGACGGCTGCGAACGCCACGATACGCTCGCCGTAGTTAGCCT 132465 Query 48300 TCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCT 48359 ||||| ||||||||| | ||||||||| ||||| ||| | ||| |||| ||||| Sbjct 132466 TCTTGCTCGAGATCCAGTTCATCGCCCAGTCCGCCTTACGCTTCACGCACGGCAGCGTCT 132525 Query 48360 CTATGGC 48366 | ||||| Sbjct 132526 CGATGGC 132532 Score = 84.2 bits (92), Expect = 4e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 |||||| || ||| || || || || ||||||||||| || ||||| | |||||| Sbjct 132662 GTACATTTCGCTGTGTACGTTTTCCATCGCGATCTGGAAACCATAGAAACAGCGGGCCTC 132721 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 |||||| || || | ||| | || | |||||| || || || || ||||| || Sbjct 132722 CGTCACCTGTACCTCCTGGCTGAACCGTTCAACCAGATTTTCGTTCACAATACCATCCGA 132781 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 ||||| |||||||| || || || | |||||| || || | | | || | || Sbjct 132782 GGCAGCGAAGAAGGCGAGCACGTGCGAGATGAAATGACGTTCACTCGGTTTCAGTGAATC 132841 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 |||| | | | ||| || || ||||| ||||| || |||||||| || || Sbjct 132842 CCAGTCTTTCATGTCCTTTGAGAGATCCACCTCTTCGACCGTCCAGAAAGAAGC 132895 >seq1047 Length=31309 Score = 96.9 bits (106), Expect = 6e-15 Identities = 259/390 (66%), Gaps = 11/390 (3%) Strand=Plus/Plus Query 213818 CTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTC 213877 ||||||||||| || || | |||||||||| ||||| |||||| | | ||| || Sbjct 17971 CTGCATGAACAAATCAGGAATCCACAGCGCGTAGAACATGTCCCTTGCGCGGACCTCTTC 18030 Query 213878 CACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCAT 213937 |||| ||| || ||||| | ||| ||||| | ||| | ||||| ||||||| Sbjct 18031 TTTGCCAGTGTTCTTTTTTAGATCCAAAAACTCAAATACATCCCCATGCCATGGCTCCAG 18090 Query 213938 GTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCAC-CAGCCTGGCCACCA 213993 ||||| |||||||| || || | |||| || || ||||| || | | || || | Sbjct 18091 ATAGATAGCAAAGGCTCCGGGTCGCTTGTTACCTCCTTGGTCAACATAACGTG--CAGTA 18148 Query 213994 -TGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATA 214052 | ||| ||| |||||| | ||||| | ||||| || || || ||||| || ||| Sbjct 18149 TTATTGTAGACGCGCAGCATCGGTACTAAACCGTTCGAAATACCATTCGTTCCTGCAATA 18208 Query 214053 TACGAGCCGGAGGCCCTCAGG--TTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGG 214110 || | || ||||| | | || ||| || ||||||||||| || | || | Sbjct 18209 TATGTTCCTTTCGCCCTAATGCAGTGTACAT--TCAGGCCTATGCCACCAGCCGATTTAG 18266 Query 214111 AGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGT 214170 |||||| ||| || | | | ||| || || || | ||||| || || | | Sbjct 18267 AGATCAAGGCACACTGTTTAAGAGTATCGTAAATTCCCTCGATGCTATCGTCCGACATTG 18326 Query 214171 TCAGCAAGAAGCAGCTCGAGAGCTGGGGCC 214200 | |||| ||||||| ||| || || |||| Sbjct 18327 TGAGCAGGAAGCAGGACGACAGTTGCGGCC 18356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931506949964800