Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1047 123 5e-23 seq14 105 1e-17 >seq1047 Length=31309 Score = 123 bits (136), Expect = 5e-23 Identities = 473/735 (64%), Gaps = 11/735 (1%) Strand=Plus/Plus Query 221683 GGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTT 221742 ||||| |||||| ||||| ||||| ||||||||||||||| || | || || || Sbjct 17620 GGGTTTCACAAACATGTTTAAGGCAATCGAGGCCAGGTTACACACAGCAATTTCATCTTT 17679 Query 221743 GTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATT 221802 | || | || || || || || ||||| |||||||| || || | | | Sbjct 17680 TGAAGAGTATTCTACAATTTCGGTGCACAGGTTTGAACACTTGATCGTTCCGATATTTTG 17739 Query 221803 GTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAG 221862 || ||| ||| |||||| || || ||||| ||||| | || | ||||| || | Sbjct 17740 CTGGTTACTCTTACGATTGCACGCATCTTTGTAAAGCATGTAAGGCACTCCAGTTTCAAC 17799 Query 221863 CTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACC 221922 ||| | | | ||| | ||| | ||| || | || | ||| ||| Sbjct 17800 CTGTGATTCTATAATTGCGAACCATAAATCTTGTGCCTTTACTTGACGGGTGAAACGACC 17859 Query 221923 CTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAG 221982 |||| || | || || || ||||| | || |||| ||||| | | ||| || Sbjct 17860 CTCGCGCT---CGTAGCCAGTGTAGAGTTTTTCGAACTCCTCACCCCATGTCTCCGACAA 17916 Query 221983 GCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCAT 222042 || ||||| | || ||||| |||||||| | |||| ||| || | |||||| Sbjct 17917 TCCAGGACAGTCGTGAGGGCACATTAGACTCCACATTTCGTTGGCTTCCACACGCTGCAT 17976 Query 222043 GAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCC 222102 ||| | || || ||||||||||| | || | || || | || ||| || ||| Sbjct 17977 GAACAAATCAGGAATCCACAGCGCGTAGAACATGTCCCTTGCGCGGACCTCTTCTTTGCC 18036 Query 222103 GTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGAC 222162 |||| || | ||||||||||||||||| | || | ||||| ||||||||||||| Sbjct 18037 AGTGTTCTTTTTTAGATCCAAAAACTCAAATACATCCCCATGCCATGGCTCCAGATAGAT 18096 Query 222163 GGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAG-AGCGTTGA 222221 || | || |||||||||||||| || || || | || ||| | ||| | ||| Sbjct 18097 AGCAAAGGCTCCGGGTCGCTTGTTACCTCCTTGGT-CAACATAACGTGCAGTATTATTGT 18155 Query 222222 AGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCAC 222281 ||| ||| || ||||||| | ||||| || ||| || || || ||| || | | Sbjct 18156 AGACGCGCAGCATCGGTACTAAACCGTTCGAAATACCATTCGTTCCTGCAATATATGTTC 18215 Query 222282 CGCCGGCCCTCAGGTTACTG-GCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATG 222340 | ||||| | | | || || || ||| || ||||| || ||| ||||||| | Sbjct 18216 CTTTCGCCCTAATG-CAGTGTACATTCAGGCCTATGCCACCAGCCGATTTAGAGATCAAG 18274 Query 222341 GCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGT--TCAGCA 222398 || || || ||||| || || ||||| || || ||| ||| | | |||| Sbjct 18275 GCACACTGTTTAAGAGTATCGTAAATTCCCTCGATGCTATCGTCC--GACATTGTGAGCA 18332 Query 222399 GAAAACAAGACGACA 222413 | || || ||||||| Sbjct 18333 GGAAGCAGGACGACA 18347 >seq14 Length=264275 Score = 105 bits (116), Expect = 1e-17 Identities = 172/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 25786 CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAG 25845 ||||| |||||||||| | || || | ||| | |||||| ||||| ||||| Sbjct 132541 CTGTTCAATGCCATCGAGACGCTGCCGTGCGTGAAGCGTAAGGCGGACTGGGCGATGAAC 132482 Query 25846 TGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAG 25905 |||||| ||| ||| |||| | |||||||| | || || || || || || ||| Sbjct 132481 TGGATCTCGAGCAAGAAGGCTAACTACGGCGAGCGTATCGTGGCGTTCGCAGCCGTCGAG 132422 Query 25906 GGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATG 25965 || ||||| ||||| || ||||| |||||||||||||| ||| || || ||| Sbjct 132421 GGTATCTTCTTCAGTGGCAGCTTTGCTGCCATCTTCTGGCTAAAGAAGCGTGGCCTGATG 132362 Query 25966 CCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTT 26025 || || ||| || ||||||||||| ||| | || || ||| | || | || ||| Sbjct 132361 CCGGGTCTGACGTTCTCCAACGAGCTGATCTCGCGCGATGAAGGTTTACATTGCGACTTT 132302 Query 26026 GCCTGCCT 26033 ||||| || Sbjct 132301 GCCTGTCT 132294 Score = 102 bits (112), Expect = 2e-16 Identities = 153/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCT-ATCCA 25570 |||||| | ||||||| | ||||| | ||||||||| | | |||| | | || | | Sbjct 132887 CTGGACGGTCGAAGAGGTGGATCTCTCAAAGGACATGAAAGACTGGGATTCACTGAAACC 132828 Query 25571 AAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAG 25630 || || | ||||| || | ||||| | || ||||| || ||||| |||||||| | Sbjct 132827 GAGT-GAACGTCATTTCATCTCGCACGTGCTCGCCTTCTTCGCTGCCTCGGATGGTATTG 132769 Query 25631 TGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTT 25690 ||||||| |||||| || | |||| | ||| || ||| ||||||| |||| Sbjct 132768 TGAACGAAAATCTGGTTGAACGGTTCAGCCAGGAGGTACAGGTGACGGAGGCCCGCTGTT 132709 Query 25691 TCTACGGTTTCCAGATGGCCATCGAAAATGTGCAC 25725 |||| ||||||||||| || || ||||| || ||| Sbjct 132708 TCTATGGTTTCCAGATCGCGATGGAAAACGTACAC 132674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928819024556800