Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq50 190 1e-42 seq299 102 5e-16 seq966 96.9 2e-14 seq610 93.3 3e-13 >seq50 Length=143579 Score = 190 bits (210), Expect = 1e-42 Identities = 600/917 (65%), Gaps = 12/917 (1%) Strand=Plus/Minus Query 475367 ACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGTATCATGGTGT 475426 ||||| || ||| ||||||| || || |||||||| ||||| || | || ||| | | Sbjct 57111 ACAGCAGGCGATACACATCTAGGAGGAGAAGATTTCGATAACCGAATGGTCTCACATTTT 57052 Query 475427 GTTGAAGATTTCAAGAGGAAAAATAAAGTTGATCTTTCAACATCTGCTAA--AGCATTAA 475484 || ||||| || || | || ||||| || | ||||| | | || |||||| Sbjct 57051 GTGGAAGAGTTTAAACGTAAGAATAAGAAGGACATCTCAAC--CAACAAACGAGCATTGC 56994 Query 475485 GACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTA 475544 | ||||| | || |||||||||||||| ||||| || | || | | || || | | Sbjct 56993 GTCGTCTGCGTACGGCTTGTGAACGTGCGAAGCGCACTTTGTCAGCATCAACCCAGGCAA 56934 Query 475545 CTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTA 475604 ||||| | ||||| ||||| ||||| ||||||| | ||| || || || || Sbjct 56933 GCATTGAAATCGATTCGCTTTTCGAAGGGATTGATTTCTACACTTCGATGACGAGAGCCC 56874 Query 475605 AATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTC 475664 |||||||| | ||| ||| | || | | || || ||||| || | ||| | Sbjct 56873 GTTTTGAAGAACTCAATTCAGATTTGTTCCGTGACACGATGGAACCAGTGGCTAAAGCCC 56814 Query 475665 TCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAA 475724 | | || | || | || ||| | | || || || ||| | || || ||||||| Sbjct 56813 TACGGGACGCCAAGATGGATAAAGGTAATATACACGACATAGTTTTGGTTGGTGGTTCAA 56754 Query 475725 CAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTT-AATGGTAAAAAGTTAAAT 475783 | | ||||| || || ||||| | || || | || ||||| || | || ||| Sbjct 56753 CTCGGATTCCGAAGGTAC-AGAAACTTCTGCAGGATTTCTTCAATGGGAAGGAATTGAAT 56695 Query 475784 GAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTA 475843 || | || || ||||||||||| ||||| || ||||| || ||||| || || || Sbjct 56694 AAATCCATCAACCCCGATGAAGCTGTCGCATACGGTGCTGCAGTACAAGCGGCAATCTTG 56635 Query 475844 TCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTG-ACGTAACTCCACTTTC 475902 |||| | | ||| | | || | | |||||| | || || ||||| || Sbjct 56634 CAAGGTGATACTTCGGAGGCGGTCCAGGATTTACTT-TTGTTGGATGTCACGCCACTGTC 56576 Query 475903 ATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTAT 475962 |||||| | ||||| | |||||| | ||||| ||| || | ||||||| | || Sbjct 56575 ATTAGGAATCGAAACGGCTGGAGGAGTAATGACCGTTCTGATCAAGCGAAATACCACGAT 56516 Query 475963 CCC-ATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCA 476021 || | | | ||| | ||| ||| | || || || || |||||| | || | Sbjct 56515 ACCGACGAAGCAAACCCAAAC-ATTCACTACCTACTCGGACAATCAACCTGGCGTTCTGA 56457 Query 476022 TCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTA 476081 | ||| |||||||||| ||| | | || ||||| || || ||||||| ||| Sbjct 56456 TTCAAGTCTTTGAAGGAGAACGGGCCATGACGAAAGACAACAATCTTCTTGGAAAATTTG 56397 Query 476082 ATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATA 476141 | || |||||||| |||||||| | ||||| || || |||||||| || || |||| Sbjct 56396 AACTCAGTGGTATTCCACCTGCTCCGCGCGGAGTGCCACAGATTGAAGTCACATTCGATA 56337 Query 476142 TTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAA- 476200 ||||||| || ||||| | ||||| ||||| ||| ||||| | |||||| || ||| Sbjct 56336 TTGATGCCAACGGTATCATGAATGTATCTGCTATTGAGAAATCGACTAACAA-AGAAAAT 56278 Query 476201 AATATAACTATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACGTATGGTT 476260 ||| || || || ||| || || | | | | |||| | || | |||||||| Sbjct 56277 CGTATCACAATCACTAACGATAAGGGACGTCTAAGTAAAGAGGACATAGATCGTATGGTG 56218 Query 476261 GATGAAGCCAAAGAGTT 476277 |||| || || |||| Sbjct 56217 AATGAGGCGGAAAAGTT 56201 Score = 147 bits (162), Expect = 1e-29 Identities = 252/360 (70%), Gaps = 8/360 (2%) Strand=Plus/Minus Query 474518 GATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGT 474577 ||||| ||| | ||||| |||||||| ||||||||| | || ||||| ||||||| Sbjct 57570 GATGCGAAACGGTTGATCGGTCGTAAGTTTGATGATCCAACGGTCCAGAGTGATATGAAG 57511 Query 474578 CATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AATACACG 474635 || ||||| || | || |||| || | ||||||||| | | ||| |||| | | Sbjct 57510 CACTGGCCGTTCGAAGTAATAAGTGACGCTGGTAAACCGAAACTGCAAGTGGAATATAAG 57451 Query 474636 CAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGA 474695 | |||| || || ||||| ||||| || | || || ||||| | || |||| Sbjct 57450 GGCGAGAAAA-AATCATTTTTC-CCGGAGGAAGTCTCATCGATGGTGCTCATTAAGATGA 57393 Query 474696 AACAAACCGCG--AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCC 474753 | |||| || |||| || ||||| || | | | |||| || || || || || Sbjct 57392 AGGAAACTGCTGAAGCT--TACCTTGGGAAAAATATTGCAAATGCTGTTATAACAGTACC 57335 Query 474754 AGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCT 474813 || || |||||||||||||| ||||||||||| || ||||| || ||| || || | Sbjct 57334 TGCGTACTTTAATGATTCTCAGCGTCAAGCAACAAAGGATGCAGGTGCAATAGCTGGCTT 57275 Query 474814 TAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAA 474873 ||||| ||||||| || || ||||| ||||| |||||| |||| || || | ||||| Sbjct 57274 GAATGTGCTACGTATCATCAACGAACCGACAGCTGCCGCAATTGCGTACGGGTTGGATAA 57215 Score = 118 bits (130), Expect = 7e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| | || |||||||| || || || || ||||||| || | || |||| || Sbjct 57834 GCAGTCGGCATTGATTTGGGGACGACGTATTCGTGTGTAGGAGTGTTCCAGCATGGAAAG 57775 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || ||||| ||||| ||||| ||| | ||||||||||| ||||| ||||||| Sbjct 57774 GTTGATATTATTGCGAATGATCAAGGCAATCGGACAACACCATCTTATGTGGCTTTTACC 57715 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || | |||||||| ||||| || ||| |||||| ||| ||||| |||| Sbjct 57714 GATACCGAGCGGCTTATTGGTGATGCAGCCAAAAATCAAGTAGCAATGAATCCAAATAAT 57655 Query 474509 ACTATTTTTG 474518 || ||||||| Sbjct 57654 ACCATTTTTG 57645 >seq299 Length=69886 Score = 102 bits (112), Expect = 5e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159 |||||||| || || || || || || |||||||| |||| ||||| | || |||||| Sbjct 6003 GATTTTTCTTCGCCCAACATCGCTAAAGAAATGCACGTTGGGCACTTACGGTCCACAATA 5944 Query 817160 ATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAAGAATAAAT 817219 || || || ||| |||| || | |||||||| || || || |||| ||| Sbjct 5943 ATAGGAGATTCTATTTGCCGATTTCTTGAATTTTTGCGACACGATGTTTTGCGAATCAAT 5884 Query 817220 CATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 817260 ||||| ||||||||||||||||| ||||||||| | || || Sbjct 5883 CATATCGGTGATTGGGGAACACAGTTTGGTATGCTTATCGC 5843 >seq966 Length=353950 Score = 96.9 bits (106), Expect = 2e-14 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || ||||| || || ||| || || || || || | ||||| Sbjct 217 ACGAAGACGGAGCACCAGATGGAGAGTCGATTCCTTCTGAATGTTGTAGTCGGACAGAGT 158 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || || ||||||||||| || |||||||| || ||||| ||||| || || Sbjct 157 ACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGGATGCC 98 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||| || |||||||| || || ||||| ||||| | || | | || | Sbjct 97 TTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGA-CCTCCA 39 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAAT 480766 | || || || || || || || ||||| |||||||| Sbjct 38 GAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAAT 2 Score = 96.9 bits (106), Expect = 2e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || ||||| || || ||| || | || || || | || || Sbjct 445 ACGAAGACGGAGCACTAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGACAGCGT 386 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || || ||||||||||| || |||||||| || ||||| |||||||| || Sbjct 385 ACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGAATGCC 326 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||| || |||||||| || || ||||| ||||| | || | | || | Sbjct 325 TTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATTGTATCGGATGGCTCGA-CCTCCA 267 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| || || || || || || ||||| |||||||| || Sbjct 266 GGGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTG 227 >seq610 Length=159711 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| ||||| ||||| || || ||| || | || || || | ||||| Sbjct 159566 ACGAAGACGCAGTACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGACAGAGT 159507 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || || ||||||||||| || |||||||| || ||||| ||||| || || Sbjct 159506 ACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGGATGCC 159447 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||| || |||||||| || || ||||| ||||| | || | | || | Sbjct 159446 TTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGA-CCTCCA 159388 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || || || || ||||| |||||||| || Sbjct 159387 GAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTG 159348 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || ||||| || || ||| || | || || || | ||||| Sbjct 159338 ACGGAGACGGAGCACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGACAGAGT 159279 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || || ||||||||||| || |||||||| || ||||| ||||| || || Sbjct 159278 ACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGGATGCC 159219 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||| || |||||||| || || ||||| ||||| | || | | || | Sbjct 159218 TTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGA-CCTCCA 159160 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || || || || ||||| |||||||| || Sbjct 159159 GAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTG 159120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268083973428560