Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20]
2,220 sequences; 136,935,538 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq2005 127 6e-24
seq80 105 2e-17
seq1047 104 7e-17
seq29 91.5 4e-13
>seq2005
Length=41187
Score = 127 bits (140), Expect = 6e-24
Identities = 193/272 (71%), Gaps = 6/272 (2%)
Strand=Plus/Plus
Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634
|||||| |||||| ||||||||||| || ||||| ||| | ||||| || || |||
Sbjct 29562 TCCATAGCCTTGATCAAACGACGCTGGATGTAACCGGTTTCTGCCGTTTTGACGGCCGTA 29621
Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694
|| || | ||| | ||||||||||| || || ||| | | ||| |||| || ||
Sbjct 29622 TCGATCAAACCCTCGCGACCACCCATGGCGTGAAAGTAGAACTCGGTCGGTGTCAGTCCG 29681
Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751
| | ||||| | || ||||||||||||| ||| || || |||| || |||| |
Sbjct 29682 GCCAGGTAGGAGTTTTCCACGAAACCACGCGACTCCGGACCGTAATCATC---CTTGATG 29738
Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811
|| ||||||||||| | || | ||| | || || ||||| || || |||||||||
Sbjct 29739 AAATGTGGCAGGGTGCGCTTGCGGAACCCGAACGGAATGCGCTTGCCCTCGACGTTCTGC 29798
Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843
|| |||| ||| | ||| | ||| || || ||
Sbjct 29799 TGCCCCACGCAAGCAATAACCTGGGAGATGTT 29830
>seq80
Length=276208
Score = 105 bits (116), Expect = 2e-17
Identities = 306/462 (66%), Gaps = 17/462 (4%)
Strand=Plus/Plus
Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATAC---AACAATAGATTCGGTTTGCTTAAATCCA 288945
||||| |||||||| ||||| |||| ||| |||| | | |||||| | ||| |||
Sbjct 203837 ATATCCGCTCTGTTGGTTGCAGCCATTACGATAACATTTGTATCGGTT--CCGAAA-CCA 203893
Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005
||||| || | || || || | ||| | ||| ||||| |||||| ||| ||
Sbjct 203894 TCCATTTCAGTAAGAAGCTGGTTCAATGTATTTTCTCTTTCGTCATTTCCGCCTGAGAAA 203953
Query 289006 TCACCCGAATCGCTCCtttttttA--CCAACAGCATCAATTTCGTCAATGAAAATCA-CA 289062
| | | |||| || || | ||||||||| || ||||||||||| | |
Sbjct 203954 TTAT-----TTTTTCCTCTTGCACGTCCGATAGCATCAATCTCATCAATGAAAATGATCG 204008
Query 289063 CACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCA 289122
|| ||||| || | | || ||||| | ||||| || | || ||||| | |||
Sbjct 204009 CA-GGAGATTTGGCTTTAGCCTGAGCAAAAAGGTCTCTAACCCTTGAAGCTCCTACCCCA 204067
Query 289123 ACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCT 289182
||| ||||||| || || |||||| | || | | | || | || || ||||| |||
Sbjct 204068 ACAAACATTTCAACGAAATCAGAACCTGAAAGTGAGAAAAACGGAACTTTAGCTTCCCCT 204127
Query 289183 GCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCC 289242
|| || || | |||| | || ||||| ||||| || || || | || || |||||
Sbjct 204128 GCAACAGCTTTTGCCAATAAGGTTTTACCGGTTCCCGGAGGCCCTACCAACAGGACTCCT 204187
Query 289243 TTTGGTACTTTTGC-CCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAAT 289301
|| || | ||| | ||||| | ||||||| |||| | | || | || || ||||
Sbjct 204188 TTAGGAATTTTACCTCCCAGTTTA-GTATATTTTTCAGAGTTTTTAAGGAAATCCACAAC 204246
Query 289302 TTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343
|||| || ||| | ||| || | || ||||||| |||||
Sbjct 204247 CTCCTGAACTTCTTCTTTCGCTCCTTCCAATCCTGCAACATC 204288
>seq1047
Length=31309
Score = 104 bits (114), Expect = 7e-17
Identities = 369/569 (65%), Gaps = 7/569 (1%)
Strand=Plus/Plus
Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCA 155645
|||| || ||||| ||||| || ||| | || | | | | | |||||||||||| ||
Sbjct 17643 CAATCGAGGCCAGGTTACACACAGCAATTTCATCTTTTGAAGA-GTATTCTACAATTTCG 17701
Query 155646 CAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAA 155705
||||||||| |||| |||||| || || | ||| | ||||||| |||| || ||
Sbjct 17702 GTGCACAGGTTTGAACACTTGATCGTTCCGATATTTTGCTGGTTACTCTTACGATTGCAC 17761
Query 155706 GCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGC 155765
||||| ||||| || ||||| || ||| || || | ||||| || | ||| | |
Sbjct 17762 GCATCTTTGTAAAGCATGTAAGGCACTCCAGTTTCAACCTGTGATTCTATAATTGCGAAC 17821
Query 155766 CAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATAC 155825
|| | || | || || | ||| | || | | || || ||| || | ||
Sbjct 17822 CATAAATCTTGTGCCTTTACTTGACGGGTGAAACGACCCTCGCGCTCGTAGCCAGTGTAG 17881
Query 155826 AGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAAC 155885
|| || | | |||||||| | || || |||||| || | | ||||| |
Sbjct 17882 AGTTTTTCGAACTCCTCACCCCATGTCTCCGACAATCCAGGACAGTCGTGAGGGCACATT 17941
Query 155886 AGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCA 155945
|| ||| |||| || | ||||||| ||| || | |||| ||| | ||
Sbjct 17942 AGACTCCACATTTCGTTGGCTTCCACACGCTGCATGAACAAATCAGGAATCCACAGCGCG 18001
Query 155946 TAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGATTCTTCCGTAGCTCTAAGAA 156004
||||| | ||||||||| ||| || | ||| ||| ||||| ||| || || ||
Sbjct 18002 TAGAACATGTCCCTTGCGCGGACCTCTTCTTTGCCAGTG-TTCTTTTTTAGATCCAAAAA 18060
Query 156005 TTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA-ACTACCATT--CCTCTT 156061
|| | ||| ||| |||||||||||| |||||||| || | | | | ||
Sbjct 18061 CTCAAATACATCCCCATGCCATGGCTCCAGATAGATAGCAAAGGCTCCGGGTCGCTTGTT 18120
Query 156062 GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACC 156121
|| || || || ||||| || ||||| |||||| |||| | ||||| || | | |||
Sbjct 18121 ACCTCCTTGGTCAACATAACGTGCAGTATTATTGTAGACGCGCAGCATCGGTACTAAACC 18180
Query 156122 ATTGGAAGTGCCATTGGTTCCGCGAATAT 156150
|| ||| | ||||| ||||| |||||
Sbjct 18181 GTTCGAAATACCATTCGTTCCTGCAATAT 18209
>seq29
Length=371068
Score = 91.5 bits (100), Expect = 4e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 106919 GAACTCATACCATAGAAAAACTTGAACTTTTTACCATCTTCCTCAATTAACTTACCTGGA 106978
|| ||||| |||||||||| | | |||||||| | ||||||||| | | ||
Sbjct 146362 GAGCTCATTCCATAGAAAAGACGGTATTTTTTACCGTTTTCCTCAATCATTTCTCCACCG 146421
Query 106979 TTTTCATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAATCAGCCCCGCCACCGAAT 107038
||||||| || || ||||| | || || | |||||||||||| || |||||||||||
Sbjct 146422 CTTTCATCATGCCCGGCAAACATTCCTCCCAGCATTACGAAATCTGCACCGCCACCGAAA 146481
Query 107039 GCTTTAGCCATATCACCAGG 107058
||||| || | |||||| ||
Sbjct 146482 GCTTTTGCAACATCACCGGG 146501
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471775735988140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |