Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2005 127 6e-24 seq80 105 2e-17 seq1047 104 7e-17 seq29 91.5 4e-13 >seq2005 Length=41187 Score = 127 bits (140), Expect = 6e-24 Identities = 193/272 (71%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| ||||||||||| || ||||| ||| | ||||| || || ||| Sbjct 29562 TCCATAGCCTTGATCAAACGACGCTGGATGTAACCGGTTTCTGCCGTTTTGACGGCCGTA 29621 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || | ||| | ||||||||||| || || ||| | | ||| |||| || || Sbjct 29622 TCGATCAAACCCTCGCGACCACCCATGGCGTGAAAGTAGAACTCGGTCGGTGTCAGTCCG 29681 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 | | ||||| | || ||||||||||||| ||| || || |||| || |||| | Sbjct 29682 GCCAGGTAGGAGTTTTCCACGAAACCACGCGACTCCGGACCGTAATCATC---CTTGATG 29738 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || ||||||||||| | || | ||| | || || ||||| || || ||||||||| Sbjct 29739 AAATGTGGCAGGGTGCGCTTGCGGAACCCGAACGGAATGCGCTTGCCCTCGACGTTCTGC 29798 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || |||| ||| | ||| | ||| || || || Sbjct 29799 TGCCCCACGCAAGCAATAACCTGGGAGATGTT 29830 >seq80 Length=276208 Score = 105 bits (116), Expect = 2e-17 Identities = 306/462 (66%), Gaps = 17/462 (4%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATAC---AACAATAGATTCGGTTTGCTTAAATCCA 288945 ||||| |||||||| ||||| |||| ||| |||| | | |||||| | ||| ||| Sbjct 203837 ATATCCGCTCTGTTGGTTGCAGCCATTACGATAACATTTGTATCGGTT--CCGAAA-CCA 203893 Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005 ||||| || | || || || | ||| | ||| ||||| |||||| ||| || Sbjct 203894 TCCATTTCAGTAAGAAGCTGGTTCAATGTATTTTCTCTTTCGTCATTTCCGCCTGAGAAA 203953 Query 289006 TCACCCGAATCGCTCCtttttttA--CCAACAGCATCAATTTCGTCAATGAAAATCA-CA 289062 | | | |||| || || | ||||||||| || ||||||||||| | | Sbjct 203954 TTAT-----TTTTTCCTCTTGCACGTCCGATAGCATCAATCTCATCAATGAAAATGATCG 204008 Query 289063 CACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCA 289122 || ||||| || | | || ||||| | ||||| || | || ||||| | ||| Sbjct 204009 CA-GGAGATTTGGCTTTAGCCTGAGCAAAAAGGTCTCTAACCCTTGAAGCTCCTACCCCA 204067 Query 289123 ACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCT 289182 ||| ||||||| || || |||||| | || | | | || | || || ||||| ||| Sbjct 204068 ACAAACATTTCAACGAAATCAGAACCTGAAAGTGAGAAAAACGGAACTTTAGCTTCCCCT 204127 Query 289183 GCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCC 289242 || || || | |||| | || ||||| ||||| || || || | || || ||||| Sbjct 204128 GCAACAGCTTTTGCCAATAAGGTTTTACCGGTTCCCGGAGGCCCTACCAACAGGACTCCT 204187 Query 289243 TTTGGTACTTTTGC-CCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAAT 289301 || || | ||| | ||||| | ||||||| |||| | | || | || || |||| Sbjct 204188 TTAGGAATTTTACCTCCCAGTTTA-GTATATTTTTCAGAGTTTTTAAGGAAATCCACAAC 204246 Query 289302 TTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 |||| || ||| | ||| || | || ||||||| ||||| Sbjct 204247 CTCCTGAACTTCTTCTTTCGCTCCTTCCAATCCTGCAACATC 204288 >seq1047 Length=31309 Score = 104 bits (114), Expect = 7e-17 Identities = 369/569 (65%), Gaps = 7/569 (1%) Strand=Plus/Plus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCTGTATTCTACAATCTCA 155645 |||| || ||||| ||||| || ||| | || | | | | | |||||||||||| || Sbjct 17643 CAATCGAGGCCAGGTTACACACAGCAATTTCATCTTTTGAAGA-GTATTCTACAATTTCG 17701 Query 155646 CAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAA 155705 ||||||||| |||| |||||| || || | ||| | ||||||| |||| || || Sbjct 17702 GTGCACAGGTTTGAACACTTGATCGTTCCGATATTTTGCTGGTTACTCTTACGATTGCAC 17761 Query 155706 GCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGC 155765 ||||| ||||| || ||||| || ||| || || | ||||| || | ||| | | Sbjct 17762 GCATCTTTGTAAAGCATGTAAGGCACTCCAGTTTCAACCTGTGATTCTATAATTGCGAAC 17821 Query 155766 CAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATAC 155825 || | || | || || | ||| | || | | || || ||| || | || Sbjct 17822 CATAAATCTTGTGCCTTTACTTGACGGGTGAAACGACCCTCGCGCTCGTAGCCAGTGTAG 17881 Query 155826 AGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAAC 155885 || || | | |||||||| | || || |||||| || | | ||||| | Sbjct 17882 AGTTTTTCGAACTCCTCACCCCATGTCTCCGACAATCCAGGACAGTCGTGAGGGCACATT 17941 Query 155886 AGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCA 155945 || ||| |||| || | ||||||| ||| || | |||| ||| | || Sbjct 17942 AGACTCCACATTTCGTTGGCTTCCACACGCTGCATGAACAAATCAGGAATCCACAGCGCG 18001 Query 155946 TAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC-GTGATTCTTCCGTAGCTCTAAGAA 156004 ||||| | ||||||||| ||| || | ||| ||| ||||| ||| || || || Sbjct 18002 TAGAACATGTCCCTTGCGCGGACCTCTTCTTTGCCAGTG-TTCTTTTTTAGATCCAAAAA 18060 Query 156005 TTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA-ACTACCATT--CCTCTT 156061 || | ||| ||| |||||||||||| |||||||| || | | | | || Sbjct 18061 CTCAAATACATCCCCATGCCATGGCTCCAGATAGATAGCAAAGGCTCCGGGTCGCTTGTT 18120 Query 156062 GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACC 156121 || || || || ||||| || ||||| |||||| |||| | ||||| || | | ||| Sbjct 18121 ACCTCCTTGGTCAACATAACGTGCAGTATTATTGTAGACGCGCAGCATCGGTACTAAACC 18180 Query 156122 ATTGGAAGTGCCATTGGTTCCGCGAATAT 156150 || ||| | ||||| ||||| ||||| Sbjct 18181 GTTCGAAATACCATTCGTTCCTGCAATAT 18209 >seq29 Length=371068 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 106919 GAACTCATACCATAGAAAAACTTGAACTTTTTACCATCTTCCTCAATTAACTTACCTGGA 106978 || ||||| |||||||||| | | |||||||| | ||||||||| | | || Sbjct 146362 GAGCTCATTCCATAGAAAAGACGGTATTTTTTACCGTTTTCCTCAATCATTTCTCCACCG 146421 Query 106979 TTTTCATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAATCAGCCCCGCCACCGAAT 107038 ||||||| || || ||||| | || || | |||||||||||| || ||||||||||| Sbjct 146422 CTTTCATCATGCCCGGCAAACATTCCTCCCAGCATTACGAAATCTGCACCGCCACCGAAA 146481 Query 107039 GCTTTAGCCATATCACCAGG 107058 ||||| || | |||||| || Sbjct 146482 GCTTTTGCAACATCACCGGG 146501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471775735988140