Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq50 273 2e-67 seq1457 161 7e-34 seq299 116 3e-20 seq934 96.9 3e-14 seq1077 86.0 5e-11 >seq50 Length=143579 Score = 273 bits (302), Expect = 2e-67 Identities = 858/1318 (65%), Gaps = 16/1318 (1%) Strand=Plus/Plus Query 281381 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 281440 ||||| || || ||| || |||||| || ||||| ||| |||| ||||| | Sbjct 56261 TTAGTGATTGTGATACGATTTTCTTTGTTAGTCGATTTCTCAATAGCAGATACATTCATG 56320 Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 ||||| |||||||| | ||| |||||||||||||| || || || || | | |||||||| Sbjct 56321 ATACCGTTGGCATCAATATCGAATGTGACTTCAATCTGTGGCACTCCGCGCGGAGCAGGT 56380 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 || || || | | |||| |||| ||| ||| || ||||| || | ||||| Sbjct 56381 GGAATACCACTGAGTTCAAATTTTCCAAGAAGATTGTTGTCTTTCGTCATGGCCCGTTCT 56440 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 || || || | ||| || ||| ||| |||||| || || || || || ||| | | Sbjct 56441 CCTTCAAAGACTTGAATCAGAACGCCAGGTTGATTGTCCGAGTAGGTAGTGAATGTTTGG 56500 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 | || || || || || || |||| | || | | |||||| | || ||||| Sbjct 56501 GTTTGCTTCGTCGGTATCGTGGTATTTCGCTTGATCAGAACGGTCATTACTCCTCCAGCC 56560 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 281740 ||||| | || | || || || |||||||| | | | | || || | || Sbjct 56561 GTTTCGATTCCTAATGACAGTGGCGTGACATCCAACAAAAGTAAATCCTGGACCGCCTCC 56620 Query 281741 TCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATC 281799 ||| | ||| ||||| | || ||||| | |||||||| ||||| ||||||||||| Sbjct 56621 GAAGTATCACCTTGCAAGATT-GCCGCTTGTACTGCAGCACCGTATGCGACAGCTTCATC 56679 Query 281800 AGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT-TA 281858 || || | | || ||| | || || |||||||| |||| ||||||| ||| || Sbjct 56680 GGGGTTGATGGATTTATTCAATTCCTTCCCATTGAAGAAATCCTGCAGAAGTT-TCTGTA 56738 Query 281859 CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCA 281918 |||| ||||| |||| ||| || ||||| || || || || || | | |||||||| Sbjct 56739 CCTTCGGAATCCGAGTTGAACCACCAACCAAAACTATGTCGTGTATATTACCTTTATCCA 56798 Query 281919 GTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAAC 281978 || | ||| || |||| | || ||||| | | | ||||| |||||| Sbjct 56799 TCTTGGCGTCCCGTAGGGCTTTAGCCACTGGTTCCATCGTGTCACGGAACAAATCTGAAT 56858 Query 281979 AAAGTTCTTCGAATTTAGCTCTAGTAA---GAGTGACATTATAATCAATTCCTTCGAACA 282035 |||||||| || ||||| || | |||| | ||||||| |||||||| | Sbjct 56859 TGAGTTCTTCAAAACGGGCTCTCGTCATCGAAGTG---TAGAAATCAATCCCTTCGAAAA 56915 Query 282036 AAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCAC 282095 ||||| | |||||| | | || || || | || | | || || |||||||||| Sbjct 56916 GCGAATCGATTTCAATGCTTGCCTGGGTTGATGCTGACAAAGTGCGCTTCGCACGTTCAC 56975 Query 282096 ATGCTGTCCTTAGTCTTCGTAAGGCT--TTTGCTGATTGATTCAAATCTGTTTTATATTT 282153 | || || | || | || || ||| |||| || |||| | || | |||| || Sbjct 56976 AAGCCGTACGCAGACGACGCAATGCTCGTTTGTTGGTTGA--GATGTCCTTCTTATTCTT 57033 Query 282154 TCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAA 282213 | || || ||||| ||| | || || | || ||||| |||||||| ||||| | Sbjct 57034 ACGTTTAAACTCTTCCACAAAATGTGAGACCATTCGGTTATCGAAATCTTCTCCTCCTAG 57093 Query 282214 TTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGT 282273 | |||| |||| || | | || | |||| || || |||| || | | || Sbjct 57094 ATGTGTATCGCCTGCTGTGGACTTGACCTCAAAAATACCGTCCTCAATAGTGAGGATAGA 57153 Query 282274 AACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 282333 ||| || ||| || || || | |||||| ||||| ||||| || | | Sbjct 57154 AACGTCGAAGGTACCGCCGCCAAGATCAAAGATAAGAACATTGCGCTCACCCACGCCTGT 57213 Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 |||||| | || ||||||| || ||||| || ||||| || || || | | ||||| Sbjct 57214 TTTATCCAACCCGTACGCAATTGCGGCAGCTGTCGGTTCGTTGATGATACGTAGCACATT 57273 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 | ||||| ||| |||||||| || || ||||| | || ||||| ||||| || || Sbjct 57274 CAAGCCAGCTATTGCACCTGCATCCTTTGTTGCTTGACGCTGAGAATCATTAAAGTACGC 57333 Query 282454 AGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTT 282513 ||| || || ||||| |||| || | | ||| |||| ||||| || |||| || Sbjct 57334 AGGTACTGTTATAACAGCATTTGCAATATTTTTCCCAAGGTAAGCTTCAGCAGTTTCCTT 57393 Query 282514 CATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGAT-TCATTTT 282572 ||| ||| | | | ||| ||||| | || || || ||| | || || | || | Sbjct 57394 CATCTTAATGAGCACCATCGATGAGACTTCCTCCGG-GAAAAATGATTTTTTCTCGCCCT 57452 Query 282573 GATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATT 282632 |||| |||| | | |||||| | | || | || |||| || ||||| | | Sbjct 57453 TATATTCCACTTGCAGTTTCGGTTTACCAGCGTCACTTATTACTTCGAACGGCCAGTGCT 57512 Query 282633 TCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATC 282690 ||||||| || || || | |||| ||| | | ||| || || ||||| ||||| Sbjct 57513 TCATATCACTCTGGACCGTTGGATCATCAAACTTACGACCGATCAACCGTTTCGCATC 57570 Score = 147 bits (162), Expect = 2e-29 Identities = 143/184 (78%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 ||||||| ||||| ||||||| | ||| |||||| |||||||||||| ||||| || Sbjct 57645 CAAAAATGGTATTATTTGGATTCATTGCTACTTGATTTTTGGCTGCATCACCAATAAGCC 57704 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 | || || || ||||| | ||||| ||||| ||||| ||||| |||||||||||||||| Sbjct 57705 GCTCGGTATCGGTAAAAGCCACATAAGATGGTGTTGTCCGATTGCCTTGATCATTCGCAA 57764 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 |||| ||||| || |||| || | || |||||||| | | || || || ||||||| Sbjct 57765 TAATATCAACCTTTCCATGCTGGAACACTCCTACACACGAATACGTCGTCCCCAAATCAA 57824 Query 282870 TACC 282873 | || Sbjct 57825 TGCC 57828 >seq1457 Length=10361 Score = 161 bits (178), Expect = 7e-34 Identities = 902/1429 (63%), Gaps = 25/1429 (2%) Strand=Plus/Plus Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491 || || || || || |||||||||| ||| ||||| || || || || || || || | | Sbjct 8496 ACGTTCAGGATTCCGTTGGCATCCAGATCGAATGTCACCTCGATCTGCGGTACACCACGC 8555 Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551 | || || || || || | | || |||||| ||| || || || || | Sbjct 8556 GGTGCCGGAGGAATACCCGAGAGGTCGAACTGGCCCAGAAGATTGTTGTCCTTGGTCATG 8615 Query 281552 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 281611 |||||| |||||||| | ||||| | |||| | | || || || | || || | Sbjct 8616 GCTCGTTCTCCCTCGAACACCTGGATCGAAACTCCTGGCTGGTTGTCGGCGTATGTCGAG 8675 Query 281612 AATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATA 281671 || | | | | ||| |||||||| | ||||| ||||| | || ||||| | Sbjct 8676 AAGATCTTCGTCTGTTTGCAAGGAATGCGCGAGTTTCGTTCAATCAGCTTCGTCATCACT 8735 Query 281672 CCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGA 281731 || || || || || | ||||| || | |||| |||||| || || | | | ||| Sbjct 8736 CCTCCGGCCGTCTCGATTCCAAGCGATAATGGAGCGACATCCACCAGCAGCACGTCCTGA 8795 Query 281732 AGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 281791 | || ||||| | | || ||| || || || || | |||||||| ||||| || Sbjct 8796 ATCTTGTCATCCTTGTCGCCGCTAAGGATGGCCGCCTGCACCGCAGCACCGTATGCCACT 8855 Query 281792 GCTTCATCAGGATTAAC----AGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAA 281846 ||||| || ||||||| || |||| | ||| ||| ||| || || || || Sbjct 8856 GCTTCGTCCGGATTAATCGAAAGGTTCAACGATTTT----CCAGCGAAGAAGTTCTGCAA 8911 Query 281847 GAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACC 281905 | | || || || || ||||||| ||| ||||| || | || || || || | Sbjct 8912 CAGC--GACTGCACTTTGGGTATACGAGTTGAGCCTCCTACCAGGACGATATCGTGAATG 8969 Query 281906 TGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCT 281964 | | | ||||||| || | ||| ||| | | || || || |||| | | | Sbjct 8970 -GAGCTCTTATCCATCTTCGCATCGGATAGAGCCTTCTCCACCGGTTGCAACGTGGAACG 9028 Query 281965 AAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAAT 282024 |||| || || || || || |||||| |||| | | | | ||||| || Sbjct 9029 GAACAGATCCGAGCACAGCTCCTCGAATCGTGCTCGGCTGATCTTCGTGTAGTAATCGAT 9088 Query 282025 TCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTT 282084 || || | || | |||| || ||||| | || || || || | || ||||| Sbjct 9089 GCCATCCATCAGGGCGTCAATCTCGATCGTTGCTTCCGTGCTCGAGGACAATGTGCGTTT 9148 Query 282085 AGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATT--CAAATCT 282142 || | || ||||| || || | | ||| | ||| ||| ||| | || ||| Sbjct 9149 GGCCCTCTCGCATGCCGTTCTCAAACGTCGCAGAGCTCGTGC--ATTCTTCGACAGATCC 9206 Query 282143 GTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCT 282202 | || ||||| | ||||| || || ||| | | || | || || ||||| ||| Sbjct 9207 TTCTTGTATTTCCGTTTGAATTCCTCGACAAAGTGAGCCACGATCCGGTTGTCAAAGTCT 9266 Query 282203 TCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT---CCATCTTCA 282259 || ||||| | | ||| | ||| | || || | || | || ||| || || || Sbjct 9267 TCGCCTCCTAGATGAGTGTCTCCGGCAGTGGCACGCACCTCAAACAGTGATCCCTCGTCG 9326 Query 282260 AGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 282319 | | || || | || || ||| || ||||||| ||| || || ||||| || | Sbjct 9327 ATCGTCAGAATGGATACGTCGAAGGTACCGCCACCCAAATCGAAGATCAGTACGTTGCGT 9386 Query 282320 TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATA 282379 ||| | |||| ||||| | || ||||| | ||| ||||| |||||||| || ||| Sbjct 9387 TCTCCCTTCAGGTTCTTATCCAAGCCGTACGCCAGAGCTGCAGCCGTTGGTTCGTTGATA 9446 Query 282380 ATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAA 282439 || | || ||||| | |||||| || ||| ||||| || ||||| |||| ||| Sbjct 9447 ATGCGCATCACATTCAAACCAGCGATGGCTCCAGCATCCTTTGTGGCCTGTCGTTGACTG 9506 Query 282440 TCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCG 282499 ||||| || || || || || || || || || | | ||| | || | || || Sbjct 9507 TCGTTGAAGTAGGCTGGCACCGTGATGACTGCGTTCTTCACTGACTGACCTAAGTAGGCT 9566 Query 282500 CTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGC 282559 || |||| |||||| || | || | ||| || |||| || |||| | | Sbjct 9567 TCGGCGGTTTCTTTCATCTTCGTCAACACCATCGAACTGATTTCCTCCGGAGCAAAGGTT 9626 Query 282560 TTGGATTCATT-TTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTT 282618 ||| || |||| | || | | ||||| | | | || | || | Sbjct 9627 TTGCGCTCGCCCTTGAACTCG-ACGCGGATCTTGGGTTTGCCGCAATCGTTCACCACCGT 9685 Query 282619 AAATGGCCAATATTTCATATCTGATTGAACACTTTGG-TCATTAAAATCTCTACCAATTA 282677 |||||||| | ||||||||| | |||| ||| || |||| || | | ||||| | Sbjct 9686 GAATGGCCAGTGTTTCATATCGGCCTGAAT-CTTCGGATCATCGAATTTGCGTCCAATCA 9744 Query 282678 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCAT 282737 | || || |||||||| | || ||||| ||||| | || | || | |||||||||| Sbjct 9745 ACCGCTTGGCATCAAACACCGTGTTGGTCGGATTCATGGCCACCTGGTTCTTGGCTGCAT 9804 Query 282738 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 282797 |||| ||||| | || || || | |||| |||||| || || || ||||| || | Sbjct 9805 CTCCGATCAGTCGCTCCGTGTCCGAGAATGCAACATAGCTCGGTGTCGTTCGATTGCCCT 9864 Query 282798 GATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 282846 | || || |||||||| || || || |||| || | ||||| || || Sbjct 9865 GGTCGTTTGCAATAATCTCCACCTTTCCATGCTGGAACACACCGACGCA 9913 >seq299 Length=69886 Score = 116 bits (128), Expect = 3e-20 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 637121 TTATTGTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGAT 637180 ||||||| |||| |||||| || || || |||||||||||||| |||| || ||| | | Sbjct 6011 TTATTGTTGATTTTTCTTCGCCCAACATCGCTAAAGAAATGCACGTTGGGCACTTACGGT 5952 Query 637181 CAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATC 637240 | || || || || || |||||||| | | | ||| | | |||||||||||| | Sbjct 5951 CCACAATAATAGGAGATTCTATTTGCCGATTTCTTGAATTTTTGCGACACGATGTTTTGC 5892 Query 637241 GTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGC 637289 | || |||||| | |||||||||||||| || || |||||| | || || Sbjct 5891 GAATCAATCATATCGGTGATTGGGGAACACAGTTTGGTATGCTTATCGC 5843 >seq934 Length=88778 Score = 96.9 bits (106), Expect = 3e-14 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 282671 CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTG 282730 || || || || || || || || || || ||||| || || | || | || | |||| Sbjct 35722 CCGATCAACCGCTTGGCGTCGAAGATTGTGTTGGTCGGGTTCATGGCCACCTGGTTTTTG 35663 Query 282731 GCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGA 282790 || ||||| || |||||| | || || || || || | ||| || || || || ||||| Sbjct 35662 GCGGCATCGCCGATCAGACGCTCGGTGTCGGTGAAGGCAACGTAGGACGGGGTGGTGCGG 35603 Query 282791 TTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTA 282850 || || || || || |||||||||||||| || |||| || | || || || || || Sbjct 35602 TTGCCCTGGTCGTTGGCAATAATTTCAACCTTGCCATGCTGGAAAACTCCAACGCAGCTG 35543 Query 282851 AAAGTTGTTCCTAAATCAATACC 282873 | || || || | ||||||||| Sbjct 35542 TAGGTCGTACCCAGATCAATACC 35520 >seq1077 Length=68013 Score = 86.0 bits (94), Expect = 5e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 |||||||| | || || | |||||| || ||||| || || || ||||| ||||| | Sbjct 39661 TTTGTCTTCACTCTTGTCCATACCATAAGCCAAAGCGGCCGCCGTCGGTTCGTTAATCAC 39720 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 | || || || ||||| || || ||| || || || ||||| || | || ||||| Sbjct 39721 ACGCAGCACGTTCAGACCGGCGATCTGTCCGGCGTCCTTCGTGGCCTGACGCTGCGAATC 39780 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 |||||| ||||| || || || || ||||||| Sbjct 39781 GTTAAAGTATGCCGGTACCGTGATGACGGCAT 39812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740521407381720