Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq610 161 2e-34 seq966 149 1e-30 seq122 143 5e-29 seq56 118 2e-21 >seq610 Length=159711 Score = 161 bits (178), Expect = 2e-34 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || | || ||||| ||||| ||||| || || || || || ||| | | ||| Sbjct 159560 ACGCAGTACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACC 159501 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || |||||||| ||||| || | || ||||||||||| || |||||||| Sbjct 159500 ATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGGATGCCTTCCTT 159441 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| |||||||| || || || || ||||||||||| || || || |||| ||| || Sbjct 159440 ATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGACCTCCAGAGTGAT 159381 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| ||||||| ||||| || || ||||||||| Sbjct 159380 GGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCATT 159344 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || | || ||||| ||||| ||||| || || || || || Sbjct 159343 CCTCCACGGAGACGGAGCACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGAC 159284 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||| || || || || |||||||| ||||| || | || ||||||||||| Sbjct 159283 AGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGG 159224 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| |||||||| || || || || ||||||||||| || || || Sbjct 159223 ATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGACC 159164 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||| || ||||| ||||||| ||||| || || |||||||| Sbjct 159163 TCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCAT 159117 >seq966 Length=353950 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || | || ||||| ||||| ||||| || || || || || Sbjct 222 CCTCCACGAAGACGGAGCACCAGATGGAGAGTCGATTCCTTCTGAATGTTGTAGTCGGAC 163 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | ||| || || || || |||||||| ||||| || | || ||||||||||| Sbjct 162 AGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGG 103 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| |||||||| || || || || ||||||||||| || || || Sbjct 102 ATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGACC 43 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATC 82805 |||| ||| || ||||| ||||||| ||||| || || ||| Sbjct 42 TCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATC 1 Score = 143 bits (158), Expect = 5e-29 Identities = 162/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || |||| || ||||| ||||| || || || || || || || || | | ||| Sbjct 439 ACGGAGCACTAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGACAGCGTACGACC 380 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || |||||||| ||||| || | || ||||||||||| || |||||||| Sbjct 379 ATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGAATGCCTTCCTT 320 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| |||||||| || || || || ||||| ||||| || || || |||| || || Sbjct 319 ATCCTGAATCTTAGCCTTCACGTTCTCAATTGTATCGGATGGCTCGACCTCCAGGGTGAT 260 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| ||||||| ||||| || || ||||||||| Sbjct 259 GGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCATT 223 >seq122 Length=254344 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || |||||||| || || || ||||| || ||||| || || Sbjct 68452 CCACCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCGGAC 68511 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | |||||||| || || || || || ||||| | | || |||||||| || Sbjct 68512 AGGGTACGTCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 68571 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| || || || || || || ||||| ||| || || Sbjct 68572 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGGCTCCACC 68631 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||| ||||||||||| ||||||||||| || || |||||||| Sbjct 68632 TCCAGAGTGATCGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 68678 >seq56 Length=464437 Score = 118 bits (130), Expect = 2e-21 Identities = 218/317 (69%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 198310 AACTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAA 198369 |||| |||| |||| |||| || || ||| ||||| | | || | |||||| | | Sbjct 139552 AACTGGAAACGGCGAAAACCCACGATGATCTGTGGAACTCGGCCCAGTTGCAGATGGTGA 139611 Query 198370 GAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGA 198429 ||||| || ||||| | ||||| | ||||||||||| || ||||| || || |||| Sbjct 139612 AGGAAGGCAAGATGCACGGGTTTTTGCGCATGTACTGGGCCAAGAAGATCCTCGAGTGGA 139671 Query 198430 CAAGAACACCGGAAGACGC-TTTGAGTTATAGTATCTATCTAAACAATAAGTACGAACTA 198488 | | | |||| ||||| || | ||| | |||||| || ||| || | | | | Sbjct 139672 CTAAATCACCCGAAGAGGCGCTCGAG-ACTGCTATCTACCTCAACGATCGCTTCAACTTG 139730 Query 198489 GACGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGAT 198548 || || ||||| ||||||||||| ||||| |||||||| || || | |||||| Sbjct 139731 GATGGGCGCGATCCGAACGGATACGTCGGTTGCATGTGGTCGATCGCTGGCATCCATGAT 139790 Query 198549 CGAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGGTTCT 198608 | | |||||||| | || ||||| ||||| | || ||||||||||| || | Sbjct 139791 CAGGGTTGGAAAGAGCGTGAGATTTTTGGCAAGATCCGCTACATGAATTATGAAGGCTGC 139850 Query 198609 AAGAAAAAATTTGATGT 198625 ||| || || ||||| Sbjct 139851 AAGCGTAAGTTCGATGT 139867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981799273152580