Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1047 145 7e-30 seq966 107 2e-18 seq610 104 2e-17 seq14 100 3e-16 >seq1047 Length=31309 Score = 145 bits (160), Expect = 7e-30 Identities = 691/1074 (64%), Gaps = 47/1074 (4%) Strand=Plus/Plus Query 146575 GCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCG-CCACGAGTGATT 146633 || ||||| || || ||||||||||| || ||||| ||||| |||| ||| || Sbjct 16760 GCTGGTTTGGTACGTAAATAATACATCCCGGTTTTAAGGCC-CATCTTCCAGCCGTAGAA 16818 Query 146634 GTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGGCT 146693 ||||| || || | | |||| | ||||| || ||| || ||| || || || Sbjct 16819 ATGAATTGATGTTAGTTTACCGTAGTTTGGCTCAGCTACGTGAATATTGAAAGACTGCGA 16878 Query 146694 TTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGC--GTTTTGTCTTCATT 146751 ||| || ||||| || |||||||||||||| | | |||| ||||| | | | Sbjct 16879 TTGGTCAATGAATGCTCCTCGGTCGGCCGCCATTT---TGATGCAAGTTTTCACAGAAAT 16935 Query 146752 -TCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCT---GGAATACCTTCAATGTTTTG 146807 ||||| | ||||||||||| || | | | | ||||| | || || ||||| Sbjct 16936 CTCCCAGACCGTTTTGTACAGA---TTGCGGATGTGTTGCGGAATTTCCTCTATCTTTTG 16992 Query 146808 AATAGAGCCCTTGTGCGCAAAAATAGTGTTTCGTATTTCGGGCGTGTAAAGGTTT-AGTT 146866 || ||||| || || || | ||| |||| ||||| ||| | ||| | || Sbjct 16993 TATTGAGCCATTTTGGGCCAGAATCTTGTTCTTCATTTCAT-CGTCCCACAGTTCCAATT 17051 Query 146867 TAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCAC---AC 146923 | | || || | | |||| ||||| || |||||||||||||| | || || || Sbjct 17052 CAGTTAGATCTTTTAGCAAATGATGATTCACTACTTGAAACTCGCCAGAAAGTACCCTAC 17111 Query 146924 GTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGG 146983 | || || ||||| |||| | || |||||||| || || || || | |||||| | Sbjct 17112 GATTG---TAGACATTTGAAGTGTATGGTTCAAAAGATTCGTTGTTACCGAGTATTTGCG 17168 Query 146984 CCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACG-CACGG 147042 | || | ||||| ||||| ||| | | || ||||| |||| || | | ||| Sbjct 17169 CAGTCGACGCGGTCGGCATAGGCGCTAAAAGCAGGGAATTGCGCACGCCATGTGTCAC-A 17227 Query 147043 ATGTTGTCCTTCAAAGTTTG-CCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTC 147101 || || || || || | | ||| ||||||| || ||| || | ||||||||| Sbjct 17228 ATATT-TCTTTTAAGCTCAGCCCAATCCCACAATTCCGTAGGCTTCTTCTCCCACATGTC 17286 Query 147102 GTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGC----GA-ACGTAGTGTAGCTTCCG 147156 |||||| || | |||| || | ||||| ||| | || |||| || | | ||| Sbjct 17287 GTACTGAAGGATTCCTTTGCTAACTGGACTTCCATCATATGATTCGTA-TGGACCATCCT 17345 Query 147157 TCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATT 147216 ||| |||||||| ||||| || || || ||||| |||| |||||||| ||| Sbjct 17346 GTGCG----GCCAATTCGCAGCTCGCTTCAAGGGCTCCGAAGTAAATGGTTTCAAACATT 17401 Query 147217 TGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCA 147276 |||| || | | |||||||| || |||||||| |||| | | || ||| Sbjct 17402 TGTTGATTCAACAGCTGGGCTTCTTCACTTTCGTAAGGGTGGCGCATCAAGATGAAAGCA 17461 Query 147277 TCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCG 147336 || |||| || || | |||| || || || || || ||| ||||| || Sbjct 17462 TCTGCCATGCCTTGCACTCCGATCCCTATCGGACGGTGGCGCATATTGGATCGCTTTGCT 17521 Query 147337 CTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACT-ACAACTTT 147395 || | ||||| | || ||| || || ||||| || || | | | ||| ||| Sbjct 17522 TCCGGAACAGGATAATAATTTATATCGATGATTTTGTTAAGATT-CTTAGTAACAGTTTT 17580 Query 147396 AGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCC---CGTCTTCGACACGTACGCATTG 147452 | || | || || || |||||||||| || | || || || | ||| Sbjct 17581 GGCTACTTCCTTTAGCTTTGCGAAATCATATGTACGATCGGGTTTCAC----AAACAT-- 17634 Query 147453 GTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCAC 147512 ||| | ||| || || ||||| || || || || | || || ||| | || Sbjct 17635 GTTTAAGGCAATCGAGGCCAGGTTACACACAGCAATTTCATCTTTTGAAGAGTATTCTAC 17694 Query 147513 GATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCG 147572 ||||||| ||||||||| || || || ||| | ||||||||| || || || || Sbjct 17695 AATTTCGGTGCACAGGTTTGAACACTTGATCGTTCCGATATTTTGCTGGTTACTCTTACG 17754 Query 147573 ATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTC 147626 ||||||||| |||||| | |||||||| || | || || || || || | ||| Sbjct 17755 ATTGCACGCATCTTTGTAAAGCATGTAAGGCACTCCAGTTTCAACCTGTGATTC 17808 >seq966 Length=353950 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||| |||||||||||| || ||||| ||| || ||||| || || | Sbjct 417 GATTCCTTTTGGATGTTGTAGTCGGACAGCGTACGACCATCCTCCAGCTGCTTTCCAGCG 358 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||||||||| |||||||| ||||| ||| || |||| Sbjct 357 AAGATAAGACGCTGCTGATCTGGAGGAATGCCTTCCTTATCCTGAATCTTAGCCTTCACG 298 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||||| ||||| || || | || | || || || ||||| || || Sbjct 297 TTCTCAATTGTATCGGATGGCTCGACCTCCAGGGTGATGGTCTTTCCTGTCAGGGTCTTC 238 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 237 ACGAAAATCTGCAT 224 Score = 98.7 bits (108), Expect = 9e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || ||||||||||||||| || ||||| ||| || ||||| || || | Sbjct 189 GATTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATCCTCCAGCTGCTTTCCAGCG 130 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||||||||| |||||||| ||||| ||| || |||| Sbjct 129 AAGATAAGACGCTGCTGATCTGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACG 70 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||||| ||||| || || | || | || || || ||||| || || Sbjct 69 TTCTCAATCGTATCGGATGGCTCGACCTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTC 10 Query 132110 ATGAAAATC 132118 | ||||||| Sbjct 9 ACGAAAATC 1 >seq610 Length=159711 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||| ||| | | || || || || |||||||||||| || ||||| | Sbjct 159559 CGCAGTACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCA 159500 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || || | |||| |||||||| ||||||||||| |||||||| ||| Sbjct 159499 TCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAGGGATGCCTTCCTTA 159440 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || |||| | || | ||||||| ||||| || || | || | Sbjct 159439 TCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGACCTCCAGAGTGATG 159380 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||| || || | |||||||||||| Sbjct 159379 GTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCAT 159345 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || |||||||||||| || ||||| ||| || ||||| || || | Sbjct 159310 GATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCCAGCTGCTTTCCAGCG 159251 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| ||||||||||| |||||||| ||||| ||| || |||| Sbjct 159250 AAGATAAGACGCTGCTGATCTGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACG 159191 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||||| ||||| || || | || | || || || ||||| || || Sbjct 159190 TTCTCAATCGTATCGGATGGCTCGACCTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTC 159131 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 159130 ACGAAAATCTGCAT 159117 >seq14 Length=264275 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACGCTGGCCGAGCGCATG 46835 ||||| | ||||| ||||| |||||| |||| ||| || | | |||||| || Sbjct 132502 AAGGCGGACTGGGCGATGAACTGGATCTCGAGCAAGAAGGCTAACTACGGCGAGCGTATC 132443 Query 46836 GTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTTAC 46895 ||||| ||||| ||||| || | || || ||||| ||||| ||||| || | Sbjct 132442 GTGGCGTTCGCAGCCGTCGAGGGTATCTTCTTCAGTGGCAGCTTTGCTGCCATCTTCTGG 132383 Query 46896 ATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGAC 46955 | || | ||| | |||||||| ||||||||| |||||| ||||||||||||| Sbjct 132382 CTAAAGAAGCGTGGCCTGATGCCGGGTCTGACGTTCTCCAACGAGCTGATCTCGCGCGAT 132323 Query 46956 GAAGGACTACACACGGACTTTGCGTGTCTC 46985 ||||| |||| |||||||| |||||| Sbjct 132322 GAAGGTTTACATTGCGACTTTGCCTGTCTC 132293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476597974039200