Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq636 136 6e-26 seq14 114 2e-19 seq1672 109 8e-18 >seq636 Length=183128 Score = 136 bits (150), Expect = 6e-26 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||| ||||| |||| |||| ||| ||| | Sbjct 2676 ATCTACAAGGTGCTGAAGCAGGTCCACCCGGATACCGG-----CATC-TCCTCGAAGGCG 2729 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| ||||| ||||| || |||| ||||||| | |||| || Sbjct 2730 ATGAGCATCATGAACAGCTTTGTGAACGATATCTTCGAGCGCATCGCCGCCGAAGCGTCC 2789 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || ||||||||| |||||| | ||||| ||||| |||||||| Sbjct 2790 CGTCTGGCACACTACAACAAGCGTTCGACGATCACGTCTCGCGAAATCCAAACCGCCGTT 2849 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||| | ||| ||| || ||||||| |||||||||||||||||| || Sbjct 2850 CGTCTGCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTCTCCGAGGGAAC 2899 >seq14 Length=264275 Score = 114 bits (126), Expect = 2e-19 Identities = 165/225 (73%), Gaps = 12/225 (5%) Strand=Plus/Minus Query 1456096 GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATC--- 1456152 |||||||| ||| |||||| |||| | ||||| |||||||||||||| |||||| Sbjct 132532 GCCATCGAGACGCTGCCGTGCGTGAAGCGTAAGGCGGACTGGGCGATGAACTGGATCTCG 132473 Query 1456153 AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCA 1456211 | |||| ||| || ||| | |||||| |||| | || || | ||||||||| | Sbjct 132472 AGCAAGAAGG--CT---AACTACGGCGAGCGTATCGTGGCGTTCGCAGCCGTCGAGGGTA 132418 Query 1456212 TCTTTTTCTCGGGCAGTTTCTGC-GCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCC 1456270 |||| ||| ||||| || ||| |||||||| ||||| |||||||| ||||| ||||| Sbjct 132417 TCTTCTTCAGTGGCAGCTT-TGCTGCCATCTTCTGGCTAAAGAAGCGTGGCCTGATGCCG 132359 Query 1456271 GGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAGTTTT 1456315 ||||| | || |||||| | ||| ||||| |||| ||| Sbjct 132358 GGTCTGACG-TTCTCCAACGAGCTGATCTCGCGCGATGAAGGTTT 132315 Score = 111 bits (122), Expect = 2e-18 Identities = 186/265 (70%), Gaps = 3/265 (1%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 ||||||| || || || ||||| | ||| ||||| || ||| |||| | ||| Sbjct 132903 AGGCCGAAGCTTCTTTCTGGACGGTCGAAGAGGTGGATCTCTCAAAGGACATGAAAGACT 132844 Query 1455856 GGGTGTCGCTGAGCGACGAC-GAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914 ||| || |||| ||| || || ||||||||| |||||| |||||||| || ||| Sbjct 132843 GGGATTCACTGAAAC-CGAGTGAACGTCATTTCATCTCGCACGTGCTCGCCTTCTT-CGC 132786 Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974 ||| ||||| || ||| ||| || |||| | || || | | ||||| || | Sbjct 132785 TGCCTCGGATGGTATTGTGAACGAAAATCTGGTTGAACGGTTCAGCCAGGAGGTACAGGT 132726 Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034 | | ||||| || | || || || ||||||||||| || |||||| | ||| |||| Sbjct 132725 GACGGAGGCCCGCTGTTTCTATGGTTTCCAGATCGCGATGGAAAACGTACACAGCGAAAT 132666 Query 1456035 CTACTCGCTCCTGATCGACACCTAC 1456059 |||||||| || |||||||||||| Sbjct 132665 GTACTCGCTTCTTATCGACACCTAC 132641 >seq1672 Length=328746 Score = 109 bits (120), Expect = 8e-18 Identities = 201/295 (68%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 332923 CGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAG 332982 ||||||||||||||| || || |||||||| ||| | | ||||||| || || || Sbjct 203769 CGTGTTGCAGGCCAGCGCGAAGCGCGTCGTGTTGCTGTAAATTTCCATCGTACGCCTAAG 203828 Query 332983 GGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCG 333042 |||||| ||||| || || | || ||| ||||||||||| || | ||||||||| | Sbjct 203829 GGCCTGCTGGGCACCCTCGGTCATGCTGTCCGCCTCGTCGAGAATCACGATCTTGTGTCT 203888 Query 333043 CCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTC 333102 || ||||||| ||| | | | ||| ||||| | || ||||| || || Sbjct 203889 ACCACGCGGCAGTGTTACCTTCTGCTGGGCAAACATCTTGATTTTGTTTCGCACCACATC 203948 Query 333103 CACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAA 333162 | || || |||| ||| ||||| || ||||||||||| || | | | |||| Sbjct 203949 GATACCCCGTTCGTTCGATGCGTTCAGCTCGAGCACGGCTTCACGGAAGTTGGGTCCCAG 204008 Query 333163 GAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 |||| || || ||||| ||| |||| || || || ||||| |||||| Sbjct 204009 CAGGATACGGGCAAGGCAGAGAATGGTCGTAGTTTTACCAACACCGGGAGGACCC 204063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177597076919640