Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq122 123 2e-23 seq111 122 8e-23 seq673 104 2e-17 seq966 96.9 3e-15 seq610 91.5 1e-13 seq56 84.2 2e-11 >seq122 Length=254344 Score = 123 bits (136), Expect = 2e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 ||||||||||| | | | ||||| || | || |||||| || ||||| || ||| Sbjct 68449 TTTCCACCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCG 68508 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 | || ||| || |||| ||||||||||| || || || ||||| |||||||| || | Sbjct 68509 GACAGGGTACGTCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGG 68568 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 |||| || |||||||||| |||||| ||| | | | | || || | ||| Sbjct 68569 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGGCTCC 68628 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCT 35739 ||||||| |||||||| || || ||||| || ||||| || |||||||| || Sbjct 68629 ACCTCCAGAGTGATCGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCATACT 68681 >seq111 Length=461598 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| ||| | ||| ||||| ||||| ||||| |||| | Sbjct 359652 CCACCACGCAGGCGCAGCACCAGATGAAGCGTCGATTCCTTCTGAATATTGTAGTCGGAC 359711 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| ||||||||||| || || || || | |||||||| |||| ||| Sbjct 359712 AGAGTACGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGCGGA 359771 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | | ||| || | || ||| Sbjct 359772 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 359831 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || |||||||| | ||||| || || |||||||| Sbjct 359832 TCAAGGGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 359878 >seq673 Length=25255 Score = 104 bits (114), Expect = 2e-17 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||| | ||| | || |||||| || |||||||| || | Sbjct 24413 CCACCACGAAGTCGCAGCACAAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 24472 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| ||||||||||| || || || |||| |||||||| || | || Sbjct 24473 AGGGTACGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 24532 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGAT---TCC 35686 | | |||||||||| |||||| ||||| | | | | ||||| |||| || Sbjct 24533 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTGTC---CGATGGCTCG 24589 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 ||||| | ||||| || || || || | |||||||| || ||||||||| || Sbjct 24590 ACCTCGAGTGTGATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATTTTG 24643 >seq966 Length=353950 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||| |||||||| |||| || || || | || ||||||||||| || || || Sbjct 414 TCCTTTTGGATGTTGTAGTCGGACAGCGTACGACCATCCTCCAGCTGCTTTCCAGCGAAG 355 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | |||||||| || | ||||| || ||||| ||| ||||| ||||| | Sbjct 354 ATAAGACGCTGCTGATCTGGAGGAATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTC 295 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || ||| | || ||||||| ||||| || || || |||| || ||||| Sbjct 294 TCAATTGTATCGGATGGCTCGACCTCCAGGGTGATGGTCTTTCCTGTCAGGGTCTTCACG 235 Query 35726 AATATCTGCATTC 35738 || |||||||||| Sbjct 234 AAAATCTGCATTC 222 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | | | ||||| ||| | || ||||| ||||||||||| |||| Sbjct 224 TTCCTCCACGAAGACGGAGCACCAGATGGAGAGTCGATTCCTTCTGAATGTTGTAGTCGG 165 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || || || | || ||||||||||| || || || || | |||||||| || | || Sbjct 164 ACAGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAG 105 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | || ||||| ||| ||||| ||||| | | | ||| ||| | || | Sbjct 104 GGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGA 45 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATC 35731 |||||| ||||| || || || |||| || ||||| || ||| Sbjct 44 CCTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATC 1 >seq610 Length=159711 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| || || || | || ||||||||||| || || || Sbjct 159535 TCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAG 159476 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | |||||||| || | ||| | || ||||| ||| ||||| ||||| | Sbjct 159475 ATAAGACGCTGCTGATCTGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTC 159416 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||| ||| | || ||||||| ||||| || || || |||| || ||||| Sbjct 159415 TCAATCGTATCGGATGGCTCGACCTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACG 159356 Query 35726 AATATCTGCATTC 35738 || |||||||||| Sbjct 159355 AAAATCTGCATTC 159343 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | | | ||||| ||| | || ||||| || |||||||| |||| Sbjct 159345 TTCCTCCACGGAGACGGAGCACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGG 159286 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || || || | || ||||||||||| || || || || | |||||||| || | || Sbjct 159285 ACAGAGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATAAGACGCTGCTGATCTGGAG 159226 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | || ||||| ||| ||||| ||||| | | | ||| ||| | || | Sbjct 159225 GGATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGA 159166 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||| ||||| || || || |||| || ||||| || |||||||| Sbjct 159165 CCTCCAGAGTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCAT 159117 >seq56 Length=464437 Score = 84.2 bits (92), Expect = 2e-11 Identities = 202/303 (67%), Gaps = 2/303 (1%) Strand=Plus/Plus Query 44118 ACCCATGATCCTTTGTGGAACGCTGCCCAAACACAACTGTTGCGAGAAGGTAAAATGCAC 44177 ||||| ||| | |||||||| | ||||| || || || ||||| || |||||| Sbjct 139569 ACCCACGATGATCTGTGGAACTCGGCCCAGTTGCAGATGGTGAAGGAAGGCAAGATGCAC 139628 Query 44178 CAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCGGAAGATGCGCAAACC 44237 | |||| ||||| ||| ||||||||| | |||||| | || | || Sbjct 139629 GGGTTTTTGCGCATGTACTGGGCCAAGAAGATCCTCGAGTGGACTAAATCACCCGAAGAG 139688 Query 44238 GCGCTCGTTCATGCCATCTATCTGAACGACAAGTACAGTTTGGACGGTCGCGACCCCAAC 44297 ||||||| ||| ||||| || ||||| | || ||||| || ||||| || ||| Sbjct 139689 GCGCTCGAGACTGCTATCTACCTCAACGATCGCTTCAACTTGGATGGGCGCGATCCGAAC 139748 Query 44298 GGGTACGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CAGGGCGTGGCGAGAGCT 44356 || ||||| || || |||||||| || || |||| || ||||| ||| ||||| Sbjct 139749 GGATACGTCGGTTGCATGTGGTCGATCGCTGGCATCCATGATCAGGGT-TGGAAAGAGCG 139807 Query 44357 ACCCATCTACGGCAAAGTGCGCTACATGAACTACAACGGTTGCGTCAGAAAGTTTGATGT 44416 || | ||||| | ||||||||||| || | || ||| | ||||| ||||| Sbjct 139808 TGAGATTTTTGGCAAGATCCGCTACATGAATTATGAAGGCTGCAAGCGTAAGTTCGATGT 139867 Query 44417 AAA 44419 || Sbjct 139868 CAA 139870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450781090477600