Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1047 165 7e-36 seq111 113 4e-20 >seq1047 Length=31309 Score = 165 bits (182), Expect = 7e-36 Identities = 1182/1874 (63%), Gaps = 75/1874 (4%) Strand=Plus/Plus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || || ||||| ||||| ||||| || || ||||| || ||||||||||| || Sbjct 16730 TTGTCAACTGTGAACTGAATCGCATTAACAGCTGGTTTGGTACGTAAATAATACATCCCG 16789 Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTG--GTAATTGG 130523 ||||| || || || || || || || || || | |||| ||| || | Sbjct 16790 GTTTTAAGGCCCATCTTCCAGCCGTAGAAATGAAT--TGATGTTAGTTTACCGTAGTTTG 16847 Query 130524 GTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAG 130583 | | || ||| || |||| || |||||||| ||||| || || || | ||| || | Sbjct 16848 GCTCAGCTACGTGAATATTGAAAGACTGCGATTGGTCAATGAATGCTCCTCGGTCGGCCG 16907 Query 130584 CCATGTCGA-GCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATG 130642 |||| | || ||| | ||| | |||||||| | || ||||| |||| | ||| Sbjct 16908 CCATTTTGATGCAAGTTTTCACAGAA-ATCTCCCAGACCGTTTTGTACAGATTGCGGATG 16966 Query 130643 TGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGC 130702 |||| || || | | ||| ||| | || || | ||| | ||| | ||| | Sbjct 16967 TGTTGCGGAATTTCCTCTATCTTTTGTATTGAGCCATTTTGGGCCAGAATCTTGTTCTTC 17026 Query 130703 ATACTTTTATCGTACAA----TCCAAG-CTGTACAAGATCTTTTACCAAATGATTATTAA 130757 || || ||||| | | ||||| | || |||||||||| |||||||| ||| | Sbjct 17027 AT---TTCATCGTCCCACAGTTCCAATTCAGTT--AGATCTTTTAGCAAATGATGATTCA 17081 Query 130758 TGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAA 130817 | |||||| || |||| || || | | | ||| | || ||| | ||||||| Sbjct 17082 CTACTTGAAACTCGCCAGAAAGTACCCTACGATTGTAGACATTTGAAGTGTATGGTTCAA 17141 Query 130818 AGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATA 130877 | ||||||||||| |||| |||||| || || | ||||| ||||| || | | | Sbjct 17142 AAGATTCGTTGTTACCGAGTATTTGCGCAGTCGACGCGGTCGGCATAGGCGCTAAAAGCA 17201 Query 130878 GAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAG 130937 | ||||| || | || || ||| || |||| || | ||| |||||||||| | Sbjct 17202 GGGAATTGCGCACGCCATGTGTCACAATATTTCTTTTAAGCTCAGCCCAATCCCACAATT 17261 Query 130938 AGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGG 130997 ||||| || || | |||||| || | || || || ||||| || | ||||| Sbjct 17262 CCGTAGGCTT---CTTCTCCCACATGTCGTACTGAAGGATTCCTTTGCTAACTGGACTTC 17318 Query 130998 ATTCGAACGATTCGTA--GA--TTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAA 131053 || | |||||||| || |||| | || |||| ||| ||| ||||| | Sbjct 17319 CATCATATGATTCGTATGGACCATCCTGTG---CG-GCCAATTCGCAGCTCGCTTCAAGG 17374 Query 131054 GCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCG 131113 |||||| | ||||||||||| ||||||| ||| || | | |||| | || ||| Sbjct 17375 GCTCCGAAGTAAATGGTTTCAAACATTTGTTGATTCAACAGCTGGGCTTCTTCACTTTCG 17434 Query 131114 TAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGT 131173 ||||| ||| || || ||||| ||||| | || || | || | || | ||| Sbjct 17435 TAAGGGTGGCGCATCAAGATGAAAGCATCTGCCATGCCTTGCACTCCGATCCCTATCGGA 17494 Query 131174 CTATG-----TTTTAAATTACATT--TACGCGAACATTCGGTGGGATAAAGGTTAATGTC 131226 | || | || || | || | | ||||| |||||| || || || Sbjct 17495 CGGTGGCGCATATTGGATCGCTTTGCTTCCGGAACA-------GGATAATAATTTATATC 17547 Query 131227 AATTATTTTGTTTAAATTGCGCACT-ACAATTTGTGTGAC-GCTTTTCAATTTGTCGAAA 131284 || |||||||| | ||| | | | ||| ||| | || | ||| |||| ||||| Sbjct 17548 GATGATTTTGTTAAGATT-CTTAGTAACAGTTTTGGCTACTTCCTTTAGCTTTG-CGAAA 17605 Query 131285 TCAAACGTGCCAGTTTCGAGGTTTACAAA-TTGATTTACACATATTGACGCCAGATTACA 131343 ||| | || | | ||| | || ||||| || || | || || || ||||| ||||| Sbjct 17606 TCATATGTACGA---TCGGGTTTCACAAACATGTTTAAGGCA-ATCGAGGCCAGGTTACA 17661 Query 131344 AACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTT 131403 || || |||| || | | || | |||||||||| ||||| || | ||| Sbjct 17662 CACAGCAATTTCATCTTTTGAAGAGTATTCTACAATTTCGGTGCACAGGTTTGAACACTT 17721 Query 131404 TATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATT-CACATGGTCCTTGTACATCATGT 131462 || || || | |||||| || || || ||| ||| ||| || ||||| | ||||| Sbjct 17722 GATCGTTCCGATATTTTGCTGGTTACTCTTACGATTGCAC-GCATCTTTGTAAAGCATGT 17780 Query 131463 AGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAA--AGAGTTTTCGAGCAGA 131520 | ||| || ||||| || || | ||| |||| | |||| | | | | | || Sbjct 17781 AAGGCACTCCAGTTTCAACCTGTGATTCTATAA--TTGCGAACCATAAATCTTGTGCCTT 17838 Query 131521 CAATTGATATTTGTATTGGC---CGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTT 131577 | |||| || | | | |||| ||||| ||| | |||| || | Sbjct 17839 TACTTGACGGGTGAAACGACCCTCGCG---CTCGTAGCCAGTGTAGAGTTTTTCGAACTC 17895 Query 131578 TTGGCCAAACGAACTGTC---CAAATTGGGACATTCGCTGGGACACATTAGCGACCACAC 131634 | || | | | || ||| ||||| ||| || |||||||| ||||| Sbjct 17896 CT---CACCCCATGTCTCCGACAATCCAGGACAGTCGTGAGGGCACATTAGACTCCACAT 17952 Query 131635 GCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATC 131694 |||| ||| || |||| ||| |||||||| || | ||| | |||||| |||| || Sbjct 17953 TTCGTTGGCTTCCACACGCTGCATGAACAAATCAGGAATCCACAGCGCGTAGAACATGTC 18012 Query 131695 TCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTC 131754 || || ||||||| | || | | ||||| | || ||||| || || | || Sbjct 18013 CCTTGCGCGGACCTCTTCTTTGCCAGTGTTCTTTTTTAGATCCAAAAACTCAAATACATC 18072 Query 131755 CGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGC---TTACCGCCTTGATT 131811 | ||||||| || |||| ||| | || | || || ||| ||||| ||||| | Sbjct 18073 CCCATGCCATGGCTCCAGATAGATAGCAAAGGCTCCGGGTCGCTTGTTACCTCCTTGGTC 18132 Query 131812 AACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCC 131871 ||||| ||| | | || ||||| ||||||| ||| || | |||||||| | | || Sbjct 18133 AACATAACGTGCAGTATTATTGTAGACGCGCAGCATCGGTACTAAACCGTTCGAAATACC 18192 Query 131872 ATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACC 131931 ||| || | ||| || | || || || || || ||| || || || || || || Sbjct 18193 ATTCGTTCCTGCAATATATGTTCCTTTCGCCCTAATGCAGTGTACATTCAGGCCTATGCC 18252 Query 131932 TCC-GCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGC 131990 || |||| |||||||||| | || || | | ||||| | || || || || | || Sbjct 18253 ACCAGCCG-ATTTAGAGATCAAGGCACACTGTTTAAGAGTATCGTAAATTCCCTCGATGC 18311 Query 131991 TGTC-CGCGGCAATGTCGACTAAAAAGCAAGAGGACAACTGTTGGTGAAATGTGCCGGCT 132049 | || || || ||| || | ||||| || |||| || | | || | || Sbjct 18312 TATCGTCCGACATTGT-GAGCAGGAAGCAGGACGACAGTTGCGGCCGTTGAGTTGCTGCA 18370 Query 132050 GAAAACAATGTGGGGCTGGCGTGTGTAAAAAGTTTTTTGGCCATGCACCGATACGATTGT 132109 | ||||| || || ||||| ||||| | | | || | |||| | Sbjct 18371 GCAAACATGGTTGGCGAAGCGTGCGTAAAGTATCGCTCTGACAGCAAATTGTACGTCTCG 18430 Query 132110 ATAGCGGACTCGATATCGCCCAGATGTATGGTCAATGCGACCCGCATGTACATGTGTTGA 132169 || || || || ||||| | ||||||| | || || |||||| ||||||||| Sbjct 18431 ATGGCAGAATCAATATCTTCACCATGTATGCCGATAGCAACACGCATGAGCATGTGTTGC 18490 Query 132170 ATGCGCTCGGCCGTTTTGCCGTCGATTTTGATCAAATAACCGTTTTCCAAAGTTTTGAAA 132229 | ||| | | || || | ||||| | || ||| ||||||| ||||||||| Sbjct 18491 GGCCTCTCCACAATCTTCCCCTTAATTTTTAACAGATATGATCTTTCCAATGTTTTGAAA 18550 Query 132230 CCAAAATATTTGTA 132243 ||||| || ||||| Sbjct 18551 CCAAAGTAATTGTA 18564 >seq111 Length=461598 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| |||| |||| ||| | ||| || || || ||||||||||||||| | Sbjct 359652 CCACCACGCAGGCGCAGCACCAGATGAAGCGTCGATTCCTTCTGAATATTGTAGTCGGAC 359711 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || ||||||| ||||| || || ||| | || |||||||| ||||||||||| Sbjct 359712 AGAGTACGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGCGGA 359771 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| |||| | || | || || | || || || Sbjct 359772 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 359831 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || ||||| || ||||| || ||||| ||||| Sbjct 359832 TCAAGGGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 359878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424922902868640