Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1047 181 1e-40 seq372 154 2e-32 seq1567 82.4 1e-10 >seq1047 Length=31309 Score = 181 bits (200), Expect = 1e-40 Identities = 776/1219 (64%), Gaps = 18/1219 (1%) Strand=Plus/Plus Query 110867 TCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAG 110926 ||||||||||| ||||||| | |||| | | ||| || ||| | | ||| || Sbjct 17276 TCCCACATGTCGTACTGAAGGATTCCTTTGCTAACTGGACTTCCATCATATGATTCGTAT 17335 Query 110927 GAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCA 110986 | ||| | | | |||||||| |||||||| || |||| | || || ||||||||| Sbjct 17336 GGACCATCCTGTGCGGCCAATTCGCAGCTCGCTTCAAGGGCTCCGAAGTAAATGGTTTCA 17395 Query 110987 AAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATA 111046 || || | ||||| | || |||||| || || | | || ||| ||| || Sbjct 17396 AACATTTGTTGATTCAACAGCTGGGCTTCTTCACTTTCGTAAGGGTGGCGCATCAAGATG 17455 Query 111047 AATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTT 111106 || |||| || | ||||| || || | || || || | ||| |||||||| || | Sbjct 17456 AAAGCATCTGCCATGCCTTGCACTCCGATCCCTATCGGACGGTGGCGCATATTGGA---T 17512 Query 111107 CGCGCAGTCTC---AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTA 111163 ||| | || ||| |||||| ||||| | || |||| | ||| ||||| || ||| Sbjct 17513 CGCTTTGCTTCCGGAACAGGATAATAATTTATATCGATGATTTTGTTAAGATTCTTAGTA 17572 Query 111164 ACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACA 111223 ||| | || | | ||| | || ||| | ||||| | || ||| || || ||| Sbjct 17573 ACAGTTTTGGCTACTTCCTTTAGCTTTGCGAAATCATATGTACGA---TCGGGTTTCACA 17629 Query 111224 TACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTAC 111283 || | | ||| || || |||| || || ||||| | ||||| || | ||| Sbjct 17630 AACATGTTTAAGGCAATCGAGGCCAGGTTACACACAGCAATTTCATCTTTTGAAGAGTAT 17689 Query 111284 TCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTC 111343 |||| |||||| || || | ||| |||| ||| ||||| || | ||| | ||||||||| Sbjct 17690 TCTACAATTTCGGTGCACAGGTTTGAACACTTGATCGTTCCGATATTTTGCTGGTTACTC 17749 Query 111344 TTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTG 111403 || ||||||||||| ||||| |||||||| ||| || || || |||||||| Sbjct 17750 TTACGATTGCACGCATCTTTGTAAAGCATGTAAGGCACTCCAGTTTCAACCTGTGATTCT 17809 Query 111404 AGAATAGCCTTCCAAACATCGGCGGCTGGTACAATGGC-GTTGGCCCGTCCCTCCGCCTC 111462 | ||| || ||| | ||| || ||| || | | || || ||||| ||| Sbjct 17810 ATAATTGCGAACCATAAATCTTGTGCCTTTAC-TTGACGGGTGAAACGACCCTCGCGCTC 17868 Query 111463 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 111522 ||| |||||||| ||| |||||||||||| | || || | || || | Sbjct 17869 GTAGCCAGTGTAGAGTTTTTCGAACTCCTCACCCCATGTCTCCGACAATCCAGGACAGTC 17928 Query 111523 GTCTGGACAGAAAAGAGACCATTGACCACCTT--CCTCAACCCGCTTCATGAAAAGGTCT 111580 || || || | ||| ||| | | || | || || |||| |||||| | || Sbjct 17929 GTGAGGGCACATTAGACTCCA--CATTTCGTTGGCTTCCACACGCTGCATGAACAAATCA 17986 Query 111581 GGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGT 111640 ||||||||||| | | || | || || || ||||||| | || ||| | Sbjct 17987 GGAATCCACAGCGCGTAGAACATGTCCCTTGCGCGGACCTCTTCTTTGCCAGTGTTCTTT 18046 Query 111641 CGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGAT 111700 || || | ||||| | | |||| | ||||||||||| ||||||| || | | | Sbjct 18047 TTTAGATCCAAAAACTCAAATACATCCCCATGCCATGGCTCCAGATAGATAGCAAAGGCT 18106 Query 111701 CCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGC 111757 || ||| || |||| | ||||| || || || || | ||||| ||| Sbjct 18107 CCGGGTCGCTTGTTACCTCCTTGGTCAACATAACGTGCAGTATTATTGTAGACGCGCAGC 18166 Query 111758 ATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTC 111817 || || | | ||| | || |||||| || || |||| | | || || || Sbjct 18167 ATCGGTACTAAACCGTTCGAAATACCATTCGTTCCTGCAATATATGTTCCTTTCGCCCTA 18226 Query 111818 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877 | || | | || || || || |||||| | || ||||| ||||||| || Sbjct 18227 ATGCAGTGTACATTCAGGCCTATGCCACCAGCCGATTTAGAGATCAAGGCACACTGTTTA 18286 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 ||||| | || || || | ||| || ||| | | || |||||||| ||| Sbjct 18287 AGAGTATCGTAAATTCCCTCGATGCTATCGTCCGACATTGTGAGCAGGAAGCAGGACGAC 18346 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 111997 | ||||| | | | || | ||| || | |||||| | ||||| | || | Sbjct 18347 AGTTGCGGCCGTTGAGTTGCTGCAGCAAACATGGTTGGCGAAGCGTGCGTAAAGTATCGC 18406 Query 111998 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATT 112057 | |||| | | ||| ||||| | | |||||||||| ||||| || || |||||||| Sbjct 18407 TCTGACAGCAAATTGTACGTCTCGATGGCAGAATCAATATCTTCACCATGTATGCCGATA 18466 Query 112058 GCGACCCGCATGAACATGT 112076 || || ||||||| ||||| Sbjct 18467 GCAACACGCATGAGCATGT 18485 >seq372 Length=50997 Score = 154 bits (170), Expect = 2e-32 Identities = 279/402 (69%), Gaps = 6/402 (1%) Strand=Plus/Plus Query 9156 CGCATCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAAC 9215 ||| |||| ||||| || |||| ||| ||| || || || ||| |||| || ||| Sbjct 39722 CGCTTCTACCAAGCATCCACCTCCGAGCTGTACGGCAAAGTGGTCGAGACACCCCAGAAC 39781 Query 9216 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGT-TGCGGCACATTG 9274 ||| | || |||||||| || |||||| || | | | ||| | | ||| | | || Sbjct 39782 GAGAAAACTCCCTTCTATCCCCGCTCGCCGTATGCATGTGCCAAGATGTACGG-ATACTG 39840 Query 9275 GCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAA 9334 | |||| | |||||||||||| | |||| ||||||| ||| ||| || || ||||| Sbjct 39841 GATCGTGATCAATTACCGCGAGGCGTACGATATGTTTGCCTGCAACGGGATTCTGTTCAA 39900 Query 9335 CCATGAATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTAC-CG-AGGGTATC 9392 ||||||||| || |||| || | | ||||||||| ||||| || || ||| | Sbjct 39901 CCATGAATCGCCCCGACGCGGAGAGAATTTTGTGACCCGTAAGATCACTCGTTCGGTCGC 39960 Query 9393 AAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGA 9452 || | ||| | || | |||| | | | || ||||||| | | | || || Sbjct 39961 GAAGATATC--GCTCGGGCAGCAGGAATGCGTCGAGCTGGGTAATCTCGATTCCAAGCGA 40018 Query 9453 GATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAA 9512 || ||||||||||||||||||||||| || || |||||||| ||| | || || ||| || Sbjct 40019 GACTGGGGTCACGCGAAGGACTATGTGGAGGCGATGTGGCTGATGATGCAGCAGGAGAAA 40078 Query 9513 GCCGACGAATATGTAGTAGCAACGGGTGAGACCCATTCAGTG 9554 | || || | ||| | || || || ||||| ||||| ||| Sbjct 40079 CCGGAAGACTTTGTCATTGCCACCGGCGAGACACATTCGGTG 40120 >seq1567 Length=65240 Score = 82.4 bits (90), Expect = 1e-10 Identities = 124/174 (71%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 181805 GTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTT 181864 ||| || |||||| | | ||||||||||| ||||| | || | || ||||||||||| Sbjct 48455 GTCCTTGCCACCCGTCAACCGCGTACCAAACTGACCGCCCGGGTACAGCAGGTTAATGTT 48396 Query 181865 GTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCA-AGGGACACTTCAC 181923 ||| || | ||| | ||||| || | ||| || | ||| || ||| ||| | Sbjct 48395 GTTGCTGCCGACAAAGTTCTGGGCCAGATTGATGATAGT-GCTGCACAGCGACTGTTCGC 48337 Query 181924 CGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCA 181977 ||||||| ||||| ||| | ||||| || | | |||| ||| |||||||||| Sbjct 48336 CGTGGTGATAAGCGGACATTTCCGCCACCGAACCGGCCAGCTGGGCCACCTTCA 48283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628014572112000