Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20]
2,220 sequences; 136,935,538 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq372 140 4e-28
seq1567 116 4e-21
>seq372
Length=50997
Score = 140 bits (154), Expect = 4e-28
Identities = 242/344 (70%), Gaps = 11/344 (3%)
Strand=Plus/Minus
Query 124509 TGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCCAC 124568
|| ||||| || ||| |||| || || ||||| || || |||||||| ||| ||||||
Sbjct 40113 TGTGTCTCGCCGGTGGCAATGACAAAGTCTTCCGGTTTCTCCTGCTGCATCATCAGCCAC 40054
Query 124569 ATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGC 124628
|| || | || ||||||| ||||| |||||||| ||||||| ||| || || || |||
Sbjct 40053 ATCGCCTCCACATAGTCCTTCGCGTGACCCCAGTCTCGCTTGGAATCGAGATTACCCAGC 39994
Query 124629 TCGAT---TGGCT--TGGCCGTCTTGT-TCCACTCCGCCAAACCCAGTGTAATCTTGCGC 124682
|||| | || || ||| | || | | || ||| |||| ||||| ||
Sbjct 39993 TCGACGCATTCCTGCTGCCCGAGCGATATCTTCGCGACCGAACG-AGTG--ATCTTACGG 39937
Query 124683 GTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACGCA 124742
|||||||| | |||||||| || || |||||||||||||| || | || |||
Sbjct 39936 GTCACAAAATTCTCTCCGCGTCGGGGCGATTCATGGTTGAACAGAATCCCGTTGCAGGCA 39877
Query 124743 AACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCTTGG-ACAC 124801
||||| |||||| ||||||||| || || ||||| || || | | ||||| |||
Sbjct 39876 AACATATCGTACGCCTCGCGGTAATTGATCACGATCCAGTATCCGTACATCTTGGCACAT 39817
Query 124802 GCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGG 124845
| |||| || ||||| ||||| || || || || || ||||
Sbjct 39816 G-CATACGGCGAGCGGGGATAGAAGGGAGTTTTCTCGTTCTGGG 39774
Score = 140 bits (154), Expect = 4e-28
Identities = 210/295 (71%), Gaps = 9/295 (3%)
Strand=Plus/Minus
Query 158959 TGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCAC 159018
|| ||||| || || ||||| |||||||| || || ||| || | ||| ||||||
Sbjct 40113 TGTGTCTCGCCGGTGGCAATGACAAAGTCTTCCGGTTTCTCCTGCTGCATCATCAGCCAC 40054
Query 159019 ATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAGC 159078
|| ||||| || || |||| ||||||||||||||| ||||||| ||| | || || |||
Sbjct 40053 ATCGCCTCCACATAGTCCTTCGCGTGACCCCAGTCTCGCTTGGAATCGAGATTACCCAGC 39994
Query 159079 TCGATGACTT-----TTCCAGA-CTTTTTCCACTCAGCCAGACCGAGCGTGATCTTGCGC 159132
|||| | || | || || | | || | | | | || ||| |||||||| ||
Sbjct 39993 TCGACGCATTCCTGCTGCCCGAGCGATATCTTCGC-GACCGAACGA--GTGATCTTACGG 39937
Query 159133 GTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGCG 159192
|||||||| | ||||||| || ||| |||||||| |||||||| ||| | || ||
Sbjct 39936 GTCACAAAATTCTCTCCGCGTCGGGGCGATTCATGGTTGAACAGAATCCCGTTGCAGGCA 39877
Query 159193 AACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGG 159247
|||| | || | |||||||||||| | ||||||||||| | | |||||
Sbjct 39876 AACATATCGTACGCCTCGCGGTAATTGATCACGATCCAGTATCCGTACATCTTGG 39822
>seq1567
Length=65240
Score = 116 bits (128), Expect = 4e-21
Identities = 292/441 (66%), Gaps = 2/441 (0%)
Strand=Plus/Minus
Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211
|| || |||||||| || ||||| |||| ||| | |||||| | || || | || |
Sbjct 48634 CCCGTGCCGATACCTTCGGCACCGTTCACCAGCAACATCGGAATGATCGGCAGATACCAT 48575
Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACG-TACTTGAGCACCGCATTGTCACTCGG 117270
| ||||| | || || ||| || || | |||| ||||| | || ||| |||
Sbjct 48574 ACCGGCTCAATACGCTGATTGTCCTC-GTACTGATACTCGAGCAGTGGATCGTCGAGCGG 48516
Query 117271 ATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGC 117330
|| ||| ||| ||| | | || || || || |||||||| | || ||
Sbjct 48515 ATGGAAGATGAGGCGTGTCAAGGTTGACAGCATGGTAAAGATGTAACGCGGACTAGCGCT 48456
Query 117331 ATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390
||||||||||| | | |||||||| || || || | ||| | || ||||| | |||
Sbjct 48455 GTCCTTGCCACCCGTCAACCGCGTACCAAACTGACCGCCCGGGTACAGCAGGTTAATGTT 48396
Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACC 117450
|||| ||| |||||||| || |||| |||| || || | || | || ||
Sbjct 48395 GTTGCTGCCGACAAAGTTCTGGGCCAGATTGATGATAGTGCTGCACAGCGACTGTTCGCC 48336
Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGA 117510
|||||||| || | | |||||||| | || |||||||| |||||||||| |||
Sbjct 48335 GTGGTGATAAGCGGACATTTCCGCCACCGAACCGGCCAGCTGGGCCACCTTCACCTCTCG 48276
Query 117511 CGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570
| | ||| ||||| ||| | | |||||||| ||||| | |||||||| |||||
Sbjct 48275 CTTATCGTTACGCTTGAAGCACGTGAACATCACCTTACGCTGGCCGGGCTTCAGCCCATC 48216
Query 117571 CGCCACGTGAGGGATCGAACG 117591
|| | || ||||||||
Sbjct 48215 GAGCATGCACGGAATCGAACG 48195
Score = 104 bits (114), Expect = 3e-17
Identities = 199/291 (68%), Gaps = 8/291 (3%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|| |||||||| || | || || ||||||||||| | || |||||| ||||||||
Sbjct 48481 GTAAAGATGTAACGCGGACTAGCGCTGTCCTTGCCACCCGTCAACCGCGTACCAAACTGA 48422
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
|| || | || ||||| | ||||||| ||| || || ||||| |||| ||| |
Sbjct 48421 CCGCCCGGGTACAGCAGGTTAATGTTGTTGCTGCCGACAAAGTTCTGGGCCAGATTGATG 48362
Query 152149 ATCGTGCCCTGCA----GACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTA 152204
|| |||| |||| |||| ||| ||||||||||| || | | ||||| | |
Sbjct 48361 ATAGTGC--TGCACAGCGACTG--TTCGCCGTGGTGATAAGCGGACATTTCCGCCACCGA 48306
Query 152205 TCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAAT 152264
|| |||| ||| |||||||||| || | | ||| ||||| || | | | ||
Sbjct 48305 ACCGGCCAGCTGGGCCACCTTCACCTCTCGCTTATCGTTACGCTTGAAGCACGTGAACAT 48246
Query 152265 CACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACG 152315
|||||| |||||| || |||| || || | || | |||||||||||
Sbjct 48245 CACCTTACGCTGGCCGGGCTTCAGCCCATCGAGCATGCACGGAATCGAACG 48195
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547200814756000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |