Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq372 140 4e-28 seq1567 116 4e-21 >seq372 Length=50997 Score = 140 bits (154), Expect = 4e-28 Identities = 242/344 (70%), Gaps = 11/344 (3%) Strand=Plus/Minus Query 124509 TGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCCAC 124568 || ||||| || ||| |||| || || ||||| || || |||||||| ||| |||||| Sbjct 40113 TGTGTCTCGCCGGTGGCAATGACAAAGTCTTCCGGTTTCTCCTGCTGCATCATCAGCCAC 40054 Query 124569 ATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGC 124628 || || | || ||||||| ||||| |||||||| ||||||| ||| || || || ||| Sbjct 40053 ATCGCCTCCACATAGTCCTTCGCGTGACCCCAGTCTCGCTTGGAATCGAGATTACCCAGC 39994 Query 124629 TCGAT---TGGCT--TGGCCGTCTTGT-TCCACTCCGCCAAACCCAGTGTAATCTTGCGC 124682 |||| | || || ||| | || | | || ||| |||| ||||| || Sbjct 39993 TCGACGCATTCCTGCTGCCCGAGCGATATCTTCGCGACCGAACG-AGTG--ATCTTACGG 39937 Query 124683 GTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACGCA 124742 |||||||| | |||||||| || || |||||||||||||| || | || ||| Sbjct 39936 GTCACAAAATTCTCTCCGCGTCGGGGCGATTCATGGTTGAACAGAATCCCGTTGCAGGCA 39877 Query 124743 AACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCTTGG-ACAC 124801 ||||| |||||| ||||||||| || || ||||| || || | | ||||| ||| Sbjct 39876 AACATATCGTACGCCTCGCGGTAATTGATCACGATCCAGTATCCGTACATCTTGGCACAT 39817 Query 124802 GCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGG 124845 | |||| || ||||| ||||| || || || || || |||| Sbjct 39816 G-CATACGGCGAGCGGGGATAGAAGGGAGTTTTCTCGTTCTGGG 39774 Score = 140 bits (154), Expect = 4e-28 Identities = 210/295 (71%), Gaps = 9/295 (3%) Strand=Plus/Minus Query 158959 TGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCAC 159018 || ||||| || || ||||| |||||||| || || ||| || | ||| |||||| Sbjct 40113 TGTGTCTCGCCGGTGGCAATGACAAAGTCTTCCGGTTTCTCCTGCTGCATCATCAGCCAC 40054 Query 159019 ATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAGC 159078 || ||||| || || |||| ||||||||||||||| ||||||| ||| | || || ||| Sbjct 40053 ATCGCCTCCACATAGTCCTTCGCGTGACCCCAGTCTCGCTTGGAATCGAGATTACCCAGC 39994 Query 159079 TCGATGACTT-----TTCCAGA-CTTTTTCCACTCAGCCAGACCGAGCGTGATCTTGCGC 159132 |||| | || | || || | | || | | | | || ||| |||||||| || Sbjct 39993 TCGACGCATTCCTGCTGCCCGAGCGATATCTTCGC-GACCGAACGA--GTGATCTTACGG 39937 Query 159133 GTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGCG 159192 |||||||| | ||||||| || ||| |||||||| |||||||| ||| | || || Sbjct 39936 GTCACAAAATTCTCTCCGCGTCGGGGCGATTCATGGTTGAACAGAATCCCGTTGCAGGCA 39877 Query 159193 AACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGG 159247 |||| | || | |||||||||||| | ||||||||||| | | ||||| Sbjct 39876 AACATATCGTACGCCTCGCGGTAATTGATCACGATCCAGTATCCGTACATCTTGG 39822 >seq1567 Length=65240 Score = 116 bits (128), Expect = 4e-21 Identities = 292/441 (66%), Gaps = 2/441 (0%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || || |||||||| || ||||| |||| ||| | |||||| | || || | || | Sbjct 48634 CCCGTGCCGATACCTTCGGCACCGTTCACCAGCAACATCGGAATGATCGGCAGATACCAT 48575 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACG-TACTTGAGCACCGCATTGTCACTCGG 117270 | ||||| | || || ||| || || | |||| ||||| | || ||| ||| Sbjct 48574 ACCGGCTCAATACGCTGATTGTCCTC-GTACTGATACTCGAGCAGTGGATCGTCGAGCGG 48516 Query 117271 ATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGC 117330 || ||| ||| ||| | | || || || || |||||||| | || || Sbjct 48515 ATGGAAGATGAGGCGTGTCAAGGTTGACAGCATGGTAAAGATGTAACGCGGACTAGCGCT 48456 Query 117331 ATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390 ||||||||||| | | |||||||| || || || | ||| | || ||||| | ||| Sbjct 48455 GTCCTTGCCACCCGTCAACCGCGTACCAAACTGACCGCCCGGGTACAGCAGGTTAATGTT 48396 Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACC 117450 |||| ||| |||||||| || |||| |||| || || | || | || || Sbjct 48395 GTTGCTGCCGACAAAGTTCTGGGCCAGATTGATGATAGTGCTGCACAGCGACTGTTCGCC 48336 Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGA 117510 |||||||| || | | |||||||| | || |||||||| |||||||||| ||| Sbjct 48335 GTGGTGATAAGCGGACATTTCCGCCACCGAACCGGCCAGCTGGGCCACCTTCACCTCTCG 48276 Query 117511 CGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 | | ||| ||||| ||| | | |||||||| ||||| | |||||||| ||||| Sbjct 48275 CTTATCGTTACGCTTGAAGCACGTGAACATCACCTTACGCTGGCCGGGCTTCAGCCCATC 48216 Query 117571 CGCCACGTGAGGGATCGAACG 117591 || | || |||||||| Sbjct 48215 GAGCATGCACGGAATCGAACG 48195 Score = 104 bits (114), Expect = 3e-17 Identities = 199/291 (68%), Gaps = 8/291 (3%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || |||||||| || | || || ||||||||||| | || |||||| |||||||| Sbjct 48481 GTAAAGATGTAACGCGGACTAGCGCTGTCCTTGCCACCCGTCAACCGCGTACCAAACTGA 48422 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || || | || ||||| | ||||||| ||| || || ||||| |||| ||| | Sbjct 48421 CCGCCCGGGTACAGCAGGTTAATGTTGTTGCTGCCGACAAAGTTCTGGGCCAGATTGATG 48362 Query 152149 ATCGTGCCCTGCA----GACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTA 152204 || |||| |||| |||| ||| ||||||||||| || | | ||||| | | Sbjct 48361 ATAGTGC--TGCACAGCGACTG--TTCGCCGTGGTGATAAGCGGACATTTCCGCCACCGA 48306 Query 152205 TCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAAT 152264 || |||| ||| |||||||||| || | | ||| ||||| || | | | || Sbjct 48305 ACCGGCCAGCTGGGCCACCTTCACCTCTCGCTTATCGTTACGCTTGAAGCACGTGAACAT 48246 Query 152265 CACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACG 152315 |||||| |||||| || |||| || || | || | ||||||||||| Sbjct 48245 CACCTTACGCTGGCCGGGCTTCAGCCCATCGAGCATGCACGGAATCGAACG 48195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547200814756000