Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq966 192 7e-44 seq610 188 8e-43 seq673 172 6e-38 seq111 161 1e-34 seq122 154 2e-32 seq1567 152 6e-32 seq372 113 5e-20 seq14 84.2 2e-11 >seq966 Length=353950 Score = 192 bits (212), Expect = 7e-44 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || ||||| || || || ||||| || || || ||||| ||| || Sbjct 223 AATGCAGATTTTCGTGAAGACCCTGACAGGAAAGACCATCACCCTGGAGGTCGAGCCATC 282 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| || |||||||||| |||||||| ||||| || ||||||||||| || Sbjct 283 CGATACAATTGAGAACGTGAAGGCTAAGATTCAGGATAAGGAAGGCATTCCTCCAGATCA 342 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || ||||| ||||| || ||||||| |||||| || | ||||| || Sbjct 343 GCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGTACGCTGTCCGACTACAA 402 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||||||||||| ||||| |||||||| | |||||||| || ||| Sbjct 403 CATCCAAAAGGAATCGACTCTCCATCTAGTGCTCCGTCTTCGTGGGGGA 451 Score = 170 bits (188), Expect = 2e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGC 27471 || || || ||||| || || || ||||| || ||||| ||||| ||| || |||| Sbjct 2 ATTTTCGTGAAGACCCTGACAGGAAAGACCATCACTCTGGAGGTCGAGCCATCCGATACG 61 Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 |||| || |||||||||| |||||||| ||||| || || |||||||| ||||||||| Sbjct 62 ATTGAGAACGTGAAGGCTAAGATTCAGGATAAGGAAGGCATCCCTCCAGATCAGCAGCGT 121 Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591 || || || ||||| ||||| || ||||||| |||||| || | ||||| || | || Sbjct 122 CTTATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGTACTCTGTCCGACTACAACATTCAG 181 Query 27592 AAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||||||| ||||| ||||| || | |||||||| || ||| Sbjct 182 AAGGAATCGACTCTCCATCTGGTGCTCCGTCTTCGTGGAGGA 223 >seq610 Length=159711 Score = 188 bits (208), Expect = 8e-43 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || ||||| || || || ||||| || ||||| ||||| ||| || Sbjct 159344 AATGCAGATTTTCGTGAAGACCCTGACAGGAAAGACCATCACTCTGGAGGTCGAGCCATC 159403 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| || |||||||||| |||||||| ||||| || || |||||||| || Sbjct 159404 CGATACGATTGAGAACGTGAAGGCTAAGATTCAGGATAAGGAAGGCATCCCTCCAGATCA 159463 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || ||||| ||||| || ||||||| |||||| || | ||||| || Sbjct 159464 GCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGTACTCTGTCCGACTACAA 159523 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| |||||||| ||||| ||||| || |||||||||| || ||| Sbjct 159524 CATCCAGAAGGAATCGACTCTCCATCTGGTACTGCGTCTTCGTGGGGGA 159572 Score = 178 bits (196), Expect = 1e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || || ||||| || ||||| ||||| ||| || Sbjct 159117 ATGCAGATTTTCGTGAAGACCCTGACAGGAAAGACCATCACTCTGGAGGTCGAGCCATCC 159176 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || |||||||||| |||||||| ||||| || || |||||||| ||| Sbjct 159177 GATACGATTGAGAACGTGAAGGCTAAGATTCAGGATAAGGAAGGCATCCCTCCAGATCAG 159236 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || ||||||| |||||| || | ||||| || Sbjct 159237 CAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGTACTCTGTCCGACTACAAC 159296 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| |||||||| ||||| ||||| || | ||||| || || ||| Sbjct 159297 ATCCAGAAGGAATCGACTCTCCATCTGGTGCTCCGTCTCCGTGGAGGA 159344 >seq673 Length=25255 Score = 172 bits (190), Expect = 6e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || || ||||| ||||||||||| || || || ||||| ||| || Sbjct 24640 AATGCAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTCGAGGTCGAGCCATC 24581 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| ||||||| || || ||||||||||||||||| || ||||| || Sbjct 24580 GGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 24521 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || || || ||||| || ||||| | |||||||| | ||||| || Sbjct 24520 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGTACCCTTTCGGACTACAA 24461 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || ||||| || |||| ||||| ||||| Sbjct 24460 CATCCAGAAGGAGTCGACCCTGCATCTTGTGCTGCGACTTCGTGGTGG 24413 >seq111 Length=461598 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || || || || ||||| || || |||||||| ||| | Sbjct 359878 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATCACCCTTGAGGTCGAGCCCTCG 359819 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||||| || || |||||||||||||| ||||| || || ||| Sbjct 359818 GATACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGGATCAG 359759 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || || || | ||||| || | ||||| ||| Sbjct 359758 CAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGACGGACGTACTCTGTCCGACTACAAT 359699 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||||||| || |||||||| || |||| || || ||||| Sbjct 359698 ATTCAGAAGGAATCGACGCTTCATCTGGTGCTGCGCCTGCGTGGTGG 359652 >seq122 Length=254344 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||| | || |||||||| || ||||| ||||| ||| | Sbjct 68678 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACGATCACTCTGGAGGTGGAGCCTTCG 68619 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||||| || || |||||||||||||| ||||| ||||| ||| Sbjct 68618 GATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 68559 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || || || ||||| || || || | |||||||| | |||||||| Sbjct 68558 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAAGACGGACGTACCCTGTCCGACTATAAC 68499 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| || || || || | ||| | ||||| || |||||| Sbjct 68498 ATCCAGAAGGAGTCGACCCTGCACTTGGTCCTCCGTCTGCGTGGTGGA 68451 >seq1567 Length=65240 Score = 152 bits (168), Expect = 6e-32 Identities = 285/419 (68%), Gaps = 0/419 (0%) Strand=Plus/Plus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 || || || ||||| ||||| |||||||| | | | ||| ||||| ||| | Sbjct 48216 GATGGGCTGAAGCCCGGCCAGCGTAAGGTGATGTTCACGTGCTTCAAGCGTAACGATAAG 48275 Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCAC 32103 | || |||||||||| |||||| | || | ||||| || | || ||||||||| Sbjct 48276 CGAGAGGTGAAGGTGGCCCAGCTGGCCGGTTCGGTGGCGGAAATGTCCGCTTATCACCAC 48335 Query 32104 GGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAAT 32163 ||||| |||||| |||| || |||| || || |||||||||||||| || Sbjct 48336 GGCGAACAGTCGCTGTGCAGCACTATCATCAATCTGGCCCAGAACTTTGTCGGCAGCAAC 48395 Query 32164 AACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGAT 32223 ||| | ||| | || | || || |||||||| || ||| | | ||||||||||| Sbjct 48396 AACATTAACCTGCTGTACCCGGGCGGTCAGTTTGGTACGCGGTTGACGGGTGGCAAGGAC 48455 Query 32224 GCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGAC 32283 || || | ||||||||||| ||| || || | | ||| ||| || ||| | Sbjct 48456 AGCGCTAGTCCGCGTTACATCTTTACCATGCTGTCAACCTTGACACGCCTCATCTTCCAT 48515 Query 32284 CCGTCGGACGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCGGTG 32343 ||| |||||| | ||||| |||| | | || ||| |||||| | |||||||| Sbjct 48516 CCGCTCGACGATCCACTGCTCGAGTATCAGTACGAGGACAATCAGCGTATTGAGCCGGTA 48575 Query 32344 TTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAACGGTGCAGAAGGCATCGGAACGGG 32402 | || ||| | |||||||| | ||||||||||||| ||||| ||||| ||||| Sbjct 48576 TGGTATCTGCCGATCATTCCGATGTTGCTGGTGAACGGTGCCGAAGGTATCGGCACGGG 48634 Score = 104 bits (114), Expect = 3e-17 Identities = 173/250 (69%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 31194 AATTACGGGAATTCCGAAGCTCGACGACGCCAACTGGGCCGGTACCCACAAGTCGCACGA 31253 ||| | ||| || || || || || || || ||| ||||| | | ||| |||| | | Sbjct 47357 AATCAAGGGCATCCCAAAACTGGAGGATGCGAACGATGCCGGGTCGCGCAACTCGCTCAA 47416 Query 31254 GTGCACGCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAG 31313 || ||||| || |||| ||||| |||||||| || || | || | |||| ||| | Sbjct 47417 CTGTACGCTCATCCTTACGGAGGGAGACTCGGCTAAAACGTTGGCCGTGTCTGGGTTGGG 47476 Query 31314 TGTTGTGGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCG 31373 ||||| |||||| | ||| ||| ||||||||||| || || |||| | ||||| || Sbjct 47477 CGTTGTCGGGCGCGACACGTACGGTGTGTTTCCGCTGCGCGGTAAGCTACTGAACGTGCG 47536 Query 31374 TGACGCCTCCGTTAAACAGGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCT 31433 ||| || || || ||| || ||| |||| || || ||| |||| |||||| | Sbjct 47537 TGAAGCGACCCACAAGCAGATTCTGGAGAATGCTGAAATTAACAATCTGATCAAGATCTT 47596 Query 31434 CGGGCTTCAG 31443 || || ||| Sbjct 47597 GGGTCTCCAG 47606 >seq372 Length=50997 Score = 113 bits (124), Expect = 5e-20 Identities = 249/371 (67%), Gaps = 3/371 (1%) Strand=Plus/Plus Query 24744 GAGATGTTTGGCAAGGTGCAGGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGA 24803 ||| ||| ||||| ||| ||||| || ||| |||| ||||| || ||||| || Sbjct 39746 GAGCTGTACGGCAAAGTGGTCGAGACACCCCAGAACGAGAAAACTCCCTTCTATCCCCGC 39805 Query 24804 AGCCCGTATGGGGTCTCAAAGGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCC 24863 ||||||| | ||| ||| || |||||||| | || ||||| ||||| Sbjct 39806 TCGCCGTATGCATGTGCCAAGATGTACGGATACTGGATCGTGATCAATTACCGCGAGGCG 39865 Query 24864 CATGGGATATATGCATGCAACGGAATTCTGTTCAACCATGAGTCGGAGCGTCGGGGACCT 24923 | | || | ||| |||||||| ||||||||||||||||| ||| || || ||| Sbjct 39866 TACGATATGTTTGCCTGCAACGGGATTCTGTTCAACCATGAATCGCCCCGACGCGGAGAG 39925 Query 24924 GAATTTGTTACACGAAAGATTACTC--TTGGTATTGACCAT-TGGATCAAGACAAGGGCA 24980 | ||||| || || ||||| |||| | ||| || || | | || | || | Sbjct 39926 AATTTTGTGACCCGTAAGATCACTCGTTCGGTCGCGAAGATATCGCTCGGGCAGCAGGAA 39985 Query 24981 CCTATTGAGCTGGGAAACCTAGATGCCAAACGTGATTGGGGGCATGCAGCCGACTACGTC 25040 | |||||||| || || ||| |||| || || ||||| || || ||||| || Sbjct 39986 TGCGTCGAGCTGGGTAATCTCGATTCCAAGCGAGACTGGGGTCACGCGAAGGACTATGTG 40045 Query 25041 GACGCCATGTGGCGCATGCTCCAACAGAATAAGCCAGAGGATTTTGTGATCGGCACCGGT 25100 || || ||||||| ||| | || ||| | || || || || ||||| || | |||||| Sbjct 40046 GAGGCGATGTGGCTGATGATGCAGCAGGAGAAACCGGAAGACTTTGTCATTGCCACCGGC 40105 Query 25101 CAGACGCATTC 25111 |||| ||||| Sbjct 40106 GAGACACATTC 40116 >seq14 Length=264275 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 64774 ATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 || ||||||||||| ||||| ||||||||||| |||||| |||| || |||||||||||| Sbjct 132391 ATCTTCTGGCTAAAGAAGCGTGGCCTGATGCCGGGTCTGACGTTCTCCAACGAGCTGATC 132332 Query 64834 TCTCGGGACGAGGG 64847 || || || || || Sbjct 132331 TCGCGCGATGAAGG 132318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570294573886400