Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20]
2,220 sequences; 136,935,538 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq673 105 5e-18
seq111 102 6e-17
seq122 89.7 3e-13
seq610 87.8 1e-12
seq966 86.0 4e-12
>seq673
Length=25255
Score = 105 bits (116), Expect = 5e-18
Identities = 148/203 (73%), Gaps = 6/203 (3%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
||||||||||||||||| ||||| ||||| || || || ||||| ||||| || || |
Sbjct 24642 AAAATGCAGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTCGAGGTCGAGCCA 24583
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
||||||| | || ||| | || | || || ||||| || || | || |||||
Sbjct 24582 TCGGACACCATCGAGAATGTGAAGGC-GAAGATCCAGGACAAGGAGGGAATCCCCCCAGA 24524
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGAT 23784
||| |||||| | || || |||||||| || ||||| |||| || | |||| | ||
Sbjct 24523 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGTACCCTTTCG--GAC 24466
Query 23785 TACAACATACAAAAAGAGTCCAC 23807
|||||||| || || ||||| ||
Sbjct 24465 TACAACATCCAGAAGGAGTCGAC 24443
>seq111
Length=461598
Score = 102 bits (112), Expect = 6e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| |||||||||||||| || || ||||| || || || || || ||
Sbjct 359878 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATCACCCTTGAGGTCGAGCCCTCG 359819
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | || ||| | || | || || ||||| || || | ||||| |||||
Sbjct 359818 GATACGATCGAGAATGTGAAGGC-CAAGATCCAGGACAAGGAGGGCATTCCGCCGGATCA 359760
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || || || ||||| || |||||||||| ||| ||| | ||| |||||
Sbjct 359759 GCAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAAGACGGACGTACTCTGTCCGACTACAA 359700
Query 23790 CATACAAAAAGAGTCCAC 23807
|| || || || || ||
Sbjct 359699 TATTCAGAAGGAATCGAC 359682
>seq122
Length=254344
Score = 89.7 bits (98), Expect = 3e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || | || || || ||||||||||| || || || | ||
Sbjct 68678 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACGATCACTCTGGAGGTGGAGCCTTCG 68619
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || | || | | || || || ||||| || || | || ||||||||
Sbjct 68618 GATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 68559
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||||| || || |||||||| || |||||||||| ||| || | ||| || |||
Sbjct 68558 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAAGACGGACGTACCCTGTCCGACTATAAC 68499
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || ||||| ||
Sbjct 68498 ATCCAGAAGGAGTCGAC 68482
>seq610
Length=159711
Score = 87.8 bits (96), Expect = 1e-12
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||||||||| || ||||| || ||||| || |||||||| || || || | |
Sbjct 159344 AATGCAGATTTTCGTGAAGACCCTGACAGGAAAGACCATCACTCTGGAGGTCGAGCCATC 159403
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| | | || || ||| || || ||||| | || ||||||||
Sbjct 159404 CGATACGATTGAGAACGTGAAGGCTAAGATTCAGGATAAGGAAGGCATCCCTCCAGATCA 159463
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || || || || || || ||||| || | || ||| | ||| |||||
Sbjct 159464 GCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGTACTCTGTCCGACTACAA 159523
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || || || ||
Sbjct 159524 CATCCAGAAGGAATCGAC 159541
Score = 86.0 bits (94), Expect = 4e-12
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||||| || ||||| || ||||| || |||||||| || || || |
Sbjct 159114 AATATGCAGATTTTCGTGAAGACCCTGACAGGAAAGACCATCACTCTGGAGGTCGAGCCA 159173
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| || || |||| | | || || ||| || || ||||| | || ||||||
Sbjct 159174 TCCGATACGATTGAGAACGTGAAGGCTAAGATTCAGGATAAGGAAGGCATCCCTCCAGAT 159233
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| |||||| | || || || || || || ||||| || | || ||| | ||| |||
Sbjct 159234 CAGCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGTACTCTGTCCGACTAC 159293
Query 23788 AACATACAAAAAGAGTCCAC 23807
||||| || || || || ||
Sbjct 159294 AACATCCAGAAGGAATCGAC 159313
>seq966
Length=353950
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||||||||| || ||||| || ||||| || ||||| || || || || | |
Sbjct 223 AATGCAGATTTTCGTGAAGACCCTGACAGGAAAGACCATCACCCTGGAGGTCGAGCCATC 282
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| | | || || ||| || || ||||| | || ||||||||
Sbjct 283 CGATACAATTGAGAACGTGAAGGCTAAGATTCAGGATAAGGAAGGCATTCCTCCAGATCA 342
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || || || || || || ||||| || | || || | ||| |||||
Sbjct 343 GCAGCGTCTTATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGTACGCTGTCCGACTACAA 402
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819
||| ||||| || || || | ||| ||||
Sbjct 403 CATCCAAAAGGAATCGACTCTCCATCTAGT 432
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338000454727760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |