Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq673 114 3e-20 seq610 114 3e-20 seq966 105 2e-17 seq111 104 5e-17 seq122 96.9 8e-15 >seq673 Length=25255 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| || |||||||| || || ||||| || ||||||||||| || | | || | Sbjct 24422 AGTCGCAGCACAAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGG 24481 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || || || || || ||||||||||| || | |||||| || | | |||||| ||| Sbjct 24482 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCC 24541 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| |||| | | |||| || ||| || || || || Sbjct 24542 TTGTCCTGGATCTTCGCCTTCACATTCTCGATGGTGTCCGATGGCTCGACCTCGAGTGTG 24601 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || ||||| ||||| || |||||||| | ||||||||| Sbjct 24602 ATGGTCTTGCCGGTGAGCGTTTTCACGAAAATCTGCATTTT 24642 >seq610 Length=159711 Score = 114 bits (126), Expect = 3e-20 Identities = 161/224 (72%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || ||||| ||||| || || || ||||||||||| |||| | ||| | Sbjct 159335 GAGACGGAGCACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACG 159276 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| || ||||||||||| | |||||| || | | ||| ||| Sbjct 159275 ACCATCCTCCAGCTGCTTT--CCAGCGAAGATAAGACGCTGCTGATCTGGAGGGATGCCT 159218 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || ||||| || || || |||| | | || || ||| || || ||| Sbjct 159217 TCCTTATCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGACCTCCAGA 159158 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || || || ||||||||||| | |||||| || Sbjct 159157 GTGATGGTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCATATT 159114 Score = 113 bits (124), Expect = 1e-19 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| ||||| || || || ||||||||||| |||| | ||| | ||||| Sbjct 159556 AGTACCAGATGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCC 159497 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || ||||||||||| | |||||| || | | ||| |||||||| | Sbjct 159496 TCCAGCTGCTTT--CCAGCGAAGATAAGACGCTGCTGATCTGGAGGGATGCCTTCCTTAT 159439 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | ||||| || || || |||| | | || || ||| || || ||||| || | Sbjct 159438 CCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGACCTCCAGAGTGATGG 159379 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || || || ||||||||||| | ||||||| Sbjct 159378 TCTTTCCTGTCAGGGTCTTCACGAAAATCTGCATT 159344 >seq966 Length=353950 Score = 105 bits (116), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| ||||| || || |||||||||||||| |||| | || | ||||| Sbjct 436 GAGCACTAGATGGAGAGTCGATTCCTTTTGGATGTTGTAGTCGGACAGCGTACGACCATC 377 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| || ||||||||||| | |||||| || | | || |||||||| Sbjct 376 CTCCAGCTGCTTT--CCAGCGAAGATAAGACGCTGCTGATCTGGAGGAATGCCTTCCTTA 319 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || ||||| || || || |||| | | || || ||| || || || || || Sbjct 318 TCCTGAATCTTAGCCTTCACGTTCTCAATTGTATCGGATGGCTCGACCTCCAGGGTGATG 259 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || ||||||||||| | ||||||| Sbjct 258 GTCTTTCCTGTCAGGGTCTTCACGAAAATCTGCATT 223 Score = 100 bits (110), Expect = 7e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| ||||| || || || || |||||||| |||| | ||| | ||||| Sbjct 208 GAGCACCAGATGGAGAGTCGATTCCTTCTGAATGTTGTAGTCGGACAGAGTACGACCATC 149 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| || ||||||||||| | |||||| || | | ||| |||||||| Sbjct 148 CTCCAGCTGCTTT--CCAGCGAAGATAAGACGCTGCTGATCTGGAGGGATGCCTTCCTTA 91 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || ||||| || || || |||| | | || || ||| || || ||||| || Sbjct 90 TCCTGAATCTTAGCCTTCACGTTCTCAATCGTATCGGATGGCTCGACCTCCAGAGTGATG 31 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAA 152095 || || || || || ||||||||||| Sbjct 30 GTCTTTCCTGTCAGGGTCTTCACGAA 5 >seq111 Length=461598 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || |||||||| || || || || || || ||||| |||| | ||| | || ||| Sbjct 359667 AGCACCAGATGAAGCGTCGATTCCTTCTGAATATTGTAGTCGGACAGAGTACGTCCGTCT 359726 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||||||||| | |||||| |||| || || || ||||| || Sbjct 359727 TCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCCGGCGGAATGCCCTCCTTGTCC 359786 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| |||| | | || || ||| || ||||| || || || Sbjct 359787 TGGATCTTGGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTGATGGTC 359846 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || || ||||||| |||||| Sbjct 359847 TTACCCGTGAGGGTTTTGACGAAGATCTGCAT 359878 >seq122 Length=254344 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | || || || ||||| || |||||||| || |||| | || | || || Sbjct 68466 GAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAGTCGGACAGGGTACGTCCGTC 68525 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || || ||||||||||| | | |||||| || | | || || ||||| || Sbjct 68526 TTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTC 68585 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| |||| | | | || ||| ||| || || ||||| || || Sbjct 68586 CTGGATCTTGGCCTTGACGTTCTCGATGGTATCCGAAGGCTCCACCTCCAGAGTGATCGT 68645 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | ||||||||||||| |||||| Sbjct 68646 CTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 68678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153787981009620