Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20darlingi_20[genbank_20GCA_5F000211455.3_202013-12-20] 2,220 sequences; 136,935,538 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq673 163 7e-35 seq966 159 8e-34 seq610 159 8e-34 seq122 141 2e-28 seq111 141 2e-28 >seq673 Length=25255 Score = 163 bits (180), Expect = 7e-35 Identities = 171/224 (76%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | |||||||||||||| ||||| || || || ||||| |||||||| || Sbjct 24642 AAAATGC---AGATTTTCGTGAAAACGCTCACCGGCAAGACCATCACACTCGAGGTCGAG 24586 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || |||||||||||||| || || ||||| |||||||| || |||||||| || Sbjct 24585 CCATCGGACACCATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCCCCA 24526 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || || ||||||||||| || ||||| || || || | || ||| | || Sbjct 24525 GATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGTACCCTTTCGGAC 24466 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || ||| |||| || || || || ||||||||||| || |||| Sbjct 24465 TACAACATCCAGAAGGAGTCGACCCTGCATCTTGTGCTGCGACT 24422 >seq966 Length=353950 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || |||||||| || |||||||| ||||| || || || Sbjct 227 CAGATTTTCGTGAAGACCCTGACAGGAAAGACCATCACCCTGGAGGTCGAGCCATCCGAT 286 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || ||||||||||| || ||||| || ||||| || ||||| Sbjct 287 ACAATTGAGAACGTGAAGGCTAAGATTCAGGATAAGGAAGGCATTCCTCCAGATCAGCAG 346 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| ||||| ||||| || ||||| | || || |||| || ||| || Sbjct 347 CGTCTTATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGTACGCTGTCCGACTACAACATC 406 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| ||||| || || ||||| || Sbjct 407 CAAAAGGAATCGACTCTCCATCTAGT 432 Score = 154 bits (170), Expect = 4e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 ||||||||||| || || |||||||| || ||||| || ||||| || || || || Sbjct 2 ATTTTCGTGAAGACCCTGACAGGAAAGACCATCACTCTGGAGGTCGAGCCATCCGATACG 61 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 || |||||||| || ||||||||||| || ||||| |||||||| || ||||| || Sbjct 62 ATTGAGAACGTGAAGGCTAAGATTCAGGATAAGGAAGGCATCCCTCCAGATCAGCAGCGT 121 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 ||||||||||| ||||| ||||| || ||||| | ||||| |||| || ||| | || Sbjct 122 CTTATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGTACTCTGTCCGACTACAACATTCAG 181 Query 178107 AAAGAATCAACACTGCATCTTGT 178129 || ||||| || || ||||| || Sbjct 182 AAGGAATCGACTCTCCATCTGGT 204 >seq610 Length=159711 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || |||||||| || ||||| || ||||| || || || Sbjct 159120 CAGATTTTCGTGAAGACCCTGACAGGAAAGACCATCACTCTGGAGGTCGAGCCATCCGAT 159179 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || ||||||||||| || ||||| |||||||| || ||||| Sbjct 159180 ACGATTGAGAACGTGAAGGCTAAGATTCAGGATAAGGAAGGCATCCCTCCAGATCAGCAG 159239 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| ||||| ||||| || ||||| | ||||| |||| || ||| || Sbjct 159240 CGTCTTATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGTACTCTGTCCGACTACAACATC 159299 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 159300 CAGAAGGAATCGACTCTCCATCTGGT 159325 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || |||||||| || ||||| || ||||| || || || Sbjct 159348 CAGATTTTCGTGAAGACCCTGACAGGAAAGACCATCACTCTGGAGGTCGAGCCATCCGAT 159407 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| || ||||||||||| || ||||| |||||||| || ||||| Sbjct 159408 ACGATTGAGAACGTGAAGGCTAAGATTCAGGATAAGGAAGGCATCCCTCCAGATCAGCAG 159467 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| ||||| ||||| || ||||| | ||||| |||| || ||| || Sbjct 159468 CGTCTTATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGTACTCTGTCCGACTACAACATC 159527 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 159528 CAGAAGGAATCGACTCTCCATCTGGT 159553 >seq122 Length=254344 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || |||||||| || |||||||| || || Sbjct 68675 CAGATCTTCGTGAAGACGTTGACTGGCAAGACGATCACTCTGGAGGTGGAGCCTTCGGAT 68616 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||| |||||||| || || || || || || ||||| Sbjct 68615 ACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAGCAG 68556 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||||| ||||| ||| | || || |||| |||||| || Sbjct 68555 CGTTTGATCTTCGCCGGCAAGCAGCTGGAAGACGGACGTACCCTGTCCGACTATAACATC 68496 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 68495 CAGAAGGAGTCGACCCTGCA-CTTG 68472 >seq111 Length=461598 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| ||||| || || || |||||||| ||||| || ||| || Sbjct 359875 CAGATCTTCGTCAAAACCCTCACGGGTAAGACCATCACCCTTGAGGTCGAGCCCTCGGAT 359816 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||| |||||||| || || || || ||||| ||||| Sbjct 359815 ACGATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGGATCAGCAG 359756 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || ||||| ||||| ||| | ||||| |||| || || | Sbjct 359755 CGTCTTATCTTCGCTGGCAAGCAGCTGGAAGACGGACGTACTCTGTCCGACTACAATATT 359696 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 359695 CAGAAGGAATCGACGCTTCATCTGGT 359670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203696961370680