Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq302 178 1e-39 seq113 91.5 2e-13 >seq302 Length=5740867 Score = 178 bits (196), Expect = 1e-39 Identities = 305/440 (69%), Gaps = 2/440 (0%) Strand=Plus/Plus Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014 |||||||| || || ||||| || || | ||||||||| | ||| | ||||| || Sbjct 73029 AACATCAGGCAGGCAAAATCACAGTGCAGTCCCTCGTCACGCGAGATCAACTCGTTCGAG 73088 Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074 || |||| || |||||| || || ||||| | ||| || || || ||||| ||| Sbjct 73089 AACGTCAGACCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATGGCCGCGAAGCTTCCA 73148 Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCT 17134 ||||| || |||||||||| || ||||| | | ||| ||| | | | || | Sbjct 73149 CTGAAGAAGATGCCCTCGACGGCAGCGAACGCCACCACTCGCTCGCCAAAGTTGGCCTGC 73208 Query 17135 TTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTC 17193 ||| | ||| ||||| ||| || |||| ||||| || | ||| | ||| | |||||| Sbjct 73209 TTGCT-CGAGATCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTCACGCACGGGAGCGTTTC 73267 Query 17194 TATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAG 17253 || || || || | | ||| |||| ||||| || ||||| ||||| || || Sbjct 73268 GATCGCGTTGAACAGGTACTCCCGCTCCTTCGGGTCGCGAATGTACGTGTCGATCAGCAG 73327 Query 17254 GCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGC 17313 |||||| ||| ||| | ||||||||| || |||||||| ||||| ||||| || || Sbjct 73328 CGAGTACATCTCGCTGTGCACGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGAGC 73387 Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373 |||| | || || ||| | ||| || ||| | ||||| ||||||||||| ||||| Sbjct 73388 CTCCGTCACCTGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCGTTCACGATACCGTC 73447 Query 17374 GCTCGCGGCGAAAAACGCCA 17393 ||||| || || |||| Sbjct 73448 CGAGGCGGCAAAGAAGGCCA 73467 >seq113 Length=5901441 Score = 91.5 bits (100), Expect = 2e-13 Identities = 185/264 (70%), Gaps = 8/264 (3%) Strand=Plus/Minus Query 119777 TCGAATTTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTG-TCGTG 119835 ||| | ||||| || || || || ||||| | | || |||||||| || ||| ||||| Sbjct 1291899 TCGTAGTTCATGTAGCGAATTTTGCCGAATATGTCGCGCTCCTTCCA-GCCCTGGTCGTG 1291841 Query 119836 GAGCCCCGCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTA-ACT 119894 || ||||| | | ||| | ||| || ||||| ||||| || || || || | ||| Sbjct 1291840 GATGCCCGCGATCGACCACATGCAACCGACGTACCCGTTCGGGTCGCGCCCGTCCAGACT 1291781 Query 119895 CGTATTTATCGTTTAAGTAGATA-CAGACGCTTAACGCACTTTCAGGAGTCTCGC-TCCA 119952 ||| |||||| | |||||| | | | | | ||| || || || |||| |||| Sbjct 1291780 -GTAGCGATCGTTCAGGTAGATGGCCGTCTCG-AGCGCCTCCTCGGGCGT-TCGCGTCCA 1291724 Query 119953 TTCCAGTAtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAAC 120012 |||||||| || || ||||||||||| || | | | || ||||| || | || || || Sbjct 1291723 CTCCAGTATCTTCTTCGCCCAGTACATGCGCAGGAAGCCGTGCATCTTGGCCTCCCGCAC 1291664 Query 120013 CATTTGAAGTTGTGCGGCGTTCCA 120036 ||| || || || || |||||||| Sbjct 1291663 CATCTGCAGCTGGGCCGCGTTCCA 1291640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517537409840880