Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq391 300 2e-76 seq302 132 6e-26 >seq391 Length=2819257 Score = 300 bits (332), Expect = 2e-76 Identities = 1182/1851 (64%), Gaps = 26/1851 (1%) Strand=Plus/Minus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 ||||| || || || | ||||||||| || || || || || | |||| ||| || Sbjct 157492 GCGGGCTTGGTGCGCAAATAGTACATGCCAGTCTTCAGGCCCATCTTCCACGCGTGGAAG 157433 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 52948 ||||| || || ||| || |||| || || | ||||| || | || || Sbjct 157432 TGCATTGACGTCAGCTTGCCGTAGTTCGGTTCCGCCACGTGGATGTTGAACGACTGCGAC 157373 Query 52949 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 53008 ||||||||||| || |||| ||| || ||||| | ||| ||| || | ||| ||| Sbjct 157372 TGATCGATGAACGCACCCCGGTCGGCTGCCATCTGGATGCACGTTTTCACCGAAATCTCC 157313 Query 53009 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG-GTTTG-TATTCTGAATAGAT 53065 |||| ||||| || | |||| | | |||| | | ||| | | ||||| || || Sbjct 157312 CAAACCGTTTTGTACAGATCGCGCACTTCCTTCGGTATTTGTTCGATGTTCTGGATCGAA 157253 Query 53066 CCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 53125 || | ||| || | ||||| || ||||| | ||| | | ||| | | Sbjct 157252 CCGTTGTGGGCCAGGATTGTGTTCTTCATATCATCGTCCCACAGACCGTGCGTGGTCAGA 157193 Query 53126 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 53185 | | | || || | || || || ||||| || || |||| || | ||| |||| Sbjct 157192 TCCTTGATCAGGTGGTGGTTCACCACCTGAAACTCGCCCGACAGAACGCGCCGGTTGTAG 157133 Query 53186 ATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 53245 | || || ||||| || | ||||| || || ||||||||||| || || || || Sbjct 157132 ACGTTGGACGTGTACGGCTCGAACGACTCGTTGTTGCCCAAAATTTGTGCCGTCGAAGCC 157073 Query 53246 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 53305 |||||||| || || | || | || | | ||||| | | || || || || Sbjct 157072 GTCGGCATCGGCGCGAGCAGCAGTGAGTTGCGCACACCGTGTTTGGCAATCTTTTCCTTC 157013 Query 53306 AGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATA 53365 || | |||||||||| || |||| |||||| || |||||| Sbjct 157012 AGCGTCGCCCAATTCCACAGGTCCGTCGGTACCTTGTTCCACATGTCGTACTGCAGAATA 156953 Query 53366 CCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCA 53425 || || || | |||||| | || || ||||| ||||| |||| | || | || Sbjct 156952 CCCTTGCTCACCGGAGATCCTTCGTACGTCTCGTACGGTCCCTCCTGAGCGGCCATCTCG 156893 Query 53426 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT 53485 || || || || | ||||| || || ||||| || || |||| || ||| || | ||| Sbjct 156892 CAGCTAGCTTCCAGCGCACCATAGTAGATGGTCTCAAATATCTGCTGATTGAGCTTTTGC 156833 Query 53486 GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACA 53545 || ||| || || | || | | | || ||||| || || | || || || Sbjct 156832 GCCTCCGCACTCTCGTACGGGAAGCCCATCAAGATGAACGCATCAGCCATACCCTGGACG 156773 Query 53546 CCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAA 53605 || |||||||| || | || | | | || ||| | ||||| || | || || | Sbjct 156772 CCGATACCGATCGGACGGTGGCGCATGTTCGAGCGCTTCGCTTCCGGCACCGGGTAGAAG 156713 Query 53606 TTAATATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGT 53662 || | || ||||| || || | ||| | | || ||| ||| | || || ||||| Sbjct 156712 TTCACGTCGATAATCTTGTTCAAGTTGCGCGTCACGATT---TTGGCTACCTCTTTCAGC 156656 Query 53663 TTGAGAAAATCAAATT----GTCCATCTATTACAAACATGTTCAATGCAATAGATGCCAG 53718 || |||||| | ||| || || |||||||||| ||||| || ||||| Sbjct 156655 TTCGCGAAATCATACGTACGGTCGGGCTGG-ACGAACATGTTCAGCGCAATCGAGGCCAG 156597 Query 53719 ATTACAAACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGATTA 53776 || || || || || || | | || || || | | ||||| |||||||| ||| Sbjct 156596 GTTGCACACCGCCACTTCGTC--CTTCGACGAGTACTCCACAATCTCGGTGCAAAGGTTA 156539 Query 53777 CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAA 53836 ||||||||||| || | |||||||| || || || || ||||| ||||| || Sbjct 156538 GAGCACTTGATGGTGCCGATGTTTTGTTGGTTGCTTTTGCGATTGCACGCGTCCTTGTAC 156479 Query 53837 AGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGA 53896 || ||| | || || || || | ||||||||| || ||||| ||| | | | Sbjct 156478 AGCATGTACGGTACGCCCGTCTCCACCTGGGATTCGATGATCGCAAACCACAGATCCTGC 156419 Query 53897 GCCTTTA--TTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAA 53954 ||||||| | ||| | | | || |||| || || ||||| || | Sbjct 156418 GCCTTTACCTGGCGGAT--GAAGCGGCCCTCCTTTTCATAACCCGTGTACAACTTCTCGA 156361 Query 53955 ACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACT 54014 |||| || ||||| || | ||||||| ||||| || | ||| |||||||| |||| Sbjct 156360 ACTCTTCGCCCCACGAATCGGCCAATCCGGGACAGTCGTGCGGGCACATCAAACTCCACG 156301 Query 54015 CTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 54074 | ||| ||| ||| || | ||| || ||||| || ||||| || || ||| | | Sbjct 156300 TTTCGTTCGCCTCCACGCGCTGCATGAACAGATCCGGTATCCAGAGCGCGTAAAACATGT 156241 Query 54075 CTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 54134 | || | | ||||| || || || || || || ||||| | ||| | | | || Sbjct 156240 CCCTTGCGCGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCTAAAAACTCAAACACAT 156181 Query 54135 CAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGAT 54194 | |||||||| |||| ||| |||| | | || ||||| || || || ||||||| Sbjct 156180 CGCCGTGCCACGGCTCCAGGTAGATGGCAAACGCACCTGGCCGCTTATTGCCGCCCTGAT 156121 Query 54195 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCAC 54254 | | ||| | || || || || || || | || ||| || | | || || || | Sbjct 156120 CGACGTACCGTGCCGTATTGTTGTACACGCGCAGCATCGGTACCAACCCGTTCGAAATTC 156061 Query 54255 CATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTAT 54312 | || || || ||||| || |||| | || || || | | | || | | || || Sbjct 156060 CGTTCGTGCCAGAGATGTACGTTCCCTTCGCCCGGATGCAGTGCACGTTCA--GCCCGAT 156003 Query 54313 CCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTAT 54372 || || ||| || ||||| | |||||| | || | ||| || ||||||||||| || Sbjct 156002 GCCACCGGCCGACTTGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAGATGCCCTCGAT 155943 Query 54373 ACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGC 54432 || || || |||| | || ||||| || |||| ||| |||| || |||| Sbjct 155942 GCTGTCGTCGGACATGGTCAGCAGAAAGCAAGACGACAGCTGGGGACGCTGCGTGGCCGC 155883 Query 54433 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTC 54492 || | ||| || ||||| || ||||| | || || || |||||||||||||| Sbjct 155882 CGCGAACATGGTCGGCGAAGCATGGGTAAAGTAACGCTCCGAGAGCAGATTGTACGTCTC 155823 Query 54493 GATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 54552 ||| |||| || || ||| || || || | ||||| ||||| | ||| ||||| Sbjct 155822 GATCGCTGCCTCGATGTCCGTGCCGTGGATGCCGATGGCGACGCGCATCAGCATATGCTG 155763 Query 54553 AGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAA 54612 || || || || |||||| || || |||| ||| || || |||| ||||| || Sbjct 155762 CGGCCTCTCGACAATCTTGCCCTTGATCTTCAACAAATACGAACGCTCCAGGGTTTTGAA 155703 Query 54613 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 || ||||||||||| ||||| || |||||||||||| | || || || Sbjct 155702 GCCGAAATAGTTGTACCCGAAGTCACGATCGTAAATAATAGCCGAATTTAG 155652 >seq302 Length=5740867 Score = 132 bits (146), Expect = 6e-26 Identities = 357/544 (66%), Gaps = 3/544 (1%) Strand=Plus/Plus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 ||||||| || || ||||| ||||| || |||||||| | || || ||||| || Sbjct 73029 AACATCAGGCAGGCAAAATCACAGTGCAGTCCCTCGTCACGCGAGATCAACTCGTTCGAG 73088 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 ||||| || || ||||| ||||||||||| || ||||| || |||| ||| || |||| Sbjct 73089 AACGTCAGACCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATGGCCGCGAAGCTTCCA 73148 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGC--GC 24303 ||||| || || || || || || || || | | || || ||| | ||| || Sbjct 73149 CTGAAGAAGATGCCCTCGACGGCAGCGAACGCCACCACTCGCTCGCCAAAGTTGGCCTGC 73208 Query 24304 TGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 | | | ||||| || | ||||| ||||||||||| || || || || | || || Sbjct 73209 TTGCTCGAGATCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTCACGCACGGGAGCGTTTCG 73268 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 || || || || || || | || || || || || || || |||| || Sbjct 73269 ATCGCGTTGAACAGGTACTCCCGCTCCTTCGGGTCGCGAATGTACGTGTCGATCAGCAGC 73328 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 ||||| || || | ||| || || || || ||||| |||||||| || | |||| Sbjct 73329 GAGTACATCTCGCTGTGCACGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGAGCC 73388 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 || || | ||| || || | || || || | | ||| || ||||| || ||||| Sbjct 73389 TCCGTCACCTGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCGTTCACGATACCGTCC 73448 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 24602 ||| ||||| || |||| || || || || | ||| || | || | Sbjct 73449 GAGGCGGCAAAGAAGGCCAGCACGTGCGAGATGAAGTGACGCTCGCTCGGCTTCAGCGAA 73508 Query 24603 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662 | ||| || || || || || || | ||||| |||||||| ||||| || || || || Sbjct 73509 TCCCAGTCCTTCATGTCCTTCGAGAGGTCCACCTCTTCCACGGTCCAGAAGGAAGCTTCC 73568 Query 24663 GCCT 24666 |||| Sbjct 73569 GCCT 73572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593712204355680