Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq490 127 2e-24 seq712 114 1e-20 seq934 109 5e-19 >seq490 Length=13136524 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| |||||||| | |||||||| ||| | |||||||||||| || || || ||||| | Sbjct 10198964 TCCACCTCGCAGACGGAGCACCAGATGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGA 10199023 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 |||||| || | || |||||||| || || || | || || | |||||| ||| || Sbjct 10199024 CAGGGTACGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGG 10199083 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||||||||| || ||||| ||||| | ||| ||| || |||||| Sbjct 10199084 GATGCCTTCCTTATCCTGAATCTTAGCCTTCACGTTCTCGATAGTGTCCGATGGCTCCAC 10199143 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || |||||||| ||||| | || ||||| || |||||||| Sbjct 10199144 TTCCAGCGTGATGGTCTTTCCGGTCAGGGTCTTGACGAAGATTTGCAT 10199191 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 |||||| || ||||| | ||| |||| ||||| || |||||||| || ||||| ||||| Sbjct 5732943 GTTTCCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTC 5732884 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 | ||| || | ||||||||||||||||||| || | || || | |||||| || Sbjct 5732883 GGACAGAGTACGTCCGTCCTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCTGG 5732824 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | || |||||||| |||||| ||||| | | | || || ||||| Sbjct 5732823 CGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATCGTGTCCGACGGCTC 5732764 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||||||||| || | ||| || || || || ||||| Sbjct 5732763 GACCTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 5732713 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| |||| ||||| || |||||||| || ||||| ||||| | | Sbjct 5731137 CCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 5731078 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||||||||| ||||| || | || || | |||||| || || Sbjct 5731077 AGAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 5731018 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | | | || || ||||| Sbjct 5731017 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATCGTGTCCGACGGCTCGACC 5730958 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||||||||| || ||||| || || || || ||||| Sbjct 5730957 TCCAGAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCAT 5730911 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| |||| ||||| || |||||||| || ||||| ||||| | | Sbjct 5732711 CCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 5732652 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||||||||| ||||| || | || || | |||||| || || Sbjct 5732651 AGAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 5732592 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | | | || || ||||| Sbjct 5732591 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATCGTGTCCGACGGCTCGACC 5732532 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||||||||| || | ||| || || || || ||||| Sbjct 5732531 TCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 5732485 Score = 89.7 bits (98), Expect = 4e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| |||| ||||| || |||||||| || ||||| ||||| | | Sbjct 5732483 CCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 5732424 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||||||||| ||||| || | || || | |||||| || || Sbjct 5732423 AGAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 5732364 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | | | || || ||||| Sbjct 5732363 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATCGTGTCCGACGGCTCGACC 5732304 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTG 21172 |||| || ||||||||||| || | ||| || || || || || Sbjct 5732303 TCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTG 5732260 >seq712 Length=12093160 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| ||| | || |||||||| || ||||| ||||| | | Sbjct 3459567 CCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 3459626 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||| ||||| || | || || | |||||| ||| || Sbjct 3459627 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGG 3459686 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | ||| ||||| |||||| Sbjct 3459687 ATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 3459746 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 || | |||||| ||||| || || | |||||||| || || ||||| ||||| Sbjct 3459747 TCAAGGGTAATCGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTGAA 3459799 >seq934 Length=8401807 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 || || || || || | |||||||| || | || || ||||| || ||||| |||||| Sbjct 268420 TTACCACCACGGAGTCGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCC 268479 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 | ||| || || | ||||||||||| ||||| ||| | || || | |||||| ||| | Sbjct 268480 GACAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCCGGG 268539 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | || |||||||| |||||| ||||| | ||| || || |||||| Sbjct 268540 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCG 268599 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || |||||||||||||| | ||||| || || || ||||| Sbjct 268600 ACCTCAAGCGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 268649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422252684804456