Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq302 524 8e-144 seq712 140 3e-28 seq490 127 2e-24 seq934 123 3e-23 >seq302 Length=5740867 Score = 524 bits (580), Expect = 8e-144 Identities = 553/724 (76%), Gaps = 8/724 (1%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || || ||||||||||| || ||||||||||| || ||||||| || |||| Sbjct 73572 AGGCGGAAGCTTCCTTCTGGACCGTGGAAGAGGTGGACCTCTCGAAGGACATGAAGGACT 73513 Query 116715 GGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 |||| |||| ||| | |||||| || |||||| ||||||||||||||| || ||| Sbjct 73512 GGGATTCGCT-GAAGCCGAGCGAGCGTCACTTCATCTCGCACGTGCTGGCCTTCTTTGCC 73454 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 ||| ||||| ||||| |||||||||||||| ||||| ||| ||||||||||||||| Sbjct 73453 GCCTCGGACGGTATCGTGAACGAGAATCTGGTGGAGCGCTTCAGCCAGGAGGTGCAGGTG 73394 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 | ||||| || ||||||||||| |||||||| || ||||||||||||||| || ||| Sbjct 73393 ACGGAGGCTCGCTGCTTCTACGGGTTTCAGATTGCGATGGAGAACGTGCACAGCGAGATG 73334 Query 116894 TATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGA---AGCTCCGTTTGTTG 116950 || ||| || |||||||||||| | ||| || ||||| || || |||| Sbjct 73333 TACTCGCTGCTGATCGACACGTACATTCGCGACCCGAAGGAGCGGGAGTACC---TGTTC 73277 Query 116951 AACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATC 117010 ||||| ||||| ||| | |||||||| || |||||||||| ||||||||| ||||||| Sbjct 73276 AACGCGATCGAAACGCTCCCGTGCGTGAAGAAGAAGGCCGACTGGGCGCTGAACTGGATC 73217 Query 117011 GCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTC 117070 | ||| ||||| ||| |||||||| ||||||| ||||| |||||||||||| || Sbjct 73216 TCGAGCAAGCAGGCCAACTTTGGCGAGCGAGTGGTGGCGTTCGCTGCCGTCGAGGGCATC 73157 Query 117071 TTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGC 117130 ||||| || || ||||| ||||| || ||||| ||||| || ||||| ||||| || Sbjct 73156 TTCTTCAGTGGAAGCTTCGCGGCCATCTTCTGGCTGAAGAAGCGTGGCCTGATGCCGGGT 73097 Query 117131 CTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190 ||||| ||| |||||| | ||||| | |||||||| ||||| || || |||||||| Sbjct 73096 CTGACGTTCTCGAACGAGTTGATCTCGCGTGACGAGGGACTGCACTGTGATTTTGCCTGC 73037 Query 117191 TTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACC 117250 || ||||| || |||||||| |||| || |||||| | ||| ||| || | Sbjct 73036 CTGATGTTCCGCTATCTGGTGCAGAAGCCGACGAAGGAGCGCGTGACGGAAATCATCCGC 72977 Query 117251 GACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGA 117310 || |||||||| ||||||||| ||||| || | ||||| ||||| | |||| || Sbjct 72976 GATGCGGTCGCAATCGAGCAGGAGTTCCTGACGAAGGCGCTCCCGGTTGATATGCTCGGT 72917 Query 117311 CTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAG 117370 | || ||||| ||||||||| |||||||||||||| ||||| || ||||||| ||| Sbjct 72916 ATGAACTGCGATCTGATGTCGCAGTACATCGAGTTCGTGGCCGATCGGTTGCTGCTGGAG 72857 Query 117371 CTGG 117374 ||| Sbjct 72856 TTGG 72853 >seq712 Length=12093160 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| |||||||| || || || ||| | || ||||| || Sbjct 3459796 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACGATTACCCTTGAGGTCGAGCCC 3459737 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | |||| || || | ||||| ||||| ||||| |||| Sbjct 3459736 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCGGAT 3459677 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || ||||||| ||| ||||| |||||||| || | ||||| || ||||||| Sbjct 3459676 CAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGACTAC 3459617 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| | || || ||||| ||| ||||| || | || || Sbjct 3459616 AACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGCCTGCGCGGTGG 3459567 >seq490 Length=13136524 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| |||||||| | || ||||| | | Sbjct 5732713 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCGTCG 5732772 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| | |||| || || | ||||| ||||| ||||| | || || Sbjct 5732773 GACACGATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCA 5732831 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| |||||||||||||| |||| || || || ||||||||| Sbjct 5732832 GCAGCGTCTGATCTTCGCCGGCAAACAGCTGGAGGACGGACGTACTCTGTCCGACTACAA 5732891 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || |||| Sbjct 5732892 CATCCAGAAGGAGTCGACCTTGCA 5732915 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| |||||||| | || ||||| | | Sbjct 5732485 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCGTCG 5732544 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| | |||| || || | ||||| ||||| ||||| | || || Sbjct 5732545 GACACGATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCA 5732603 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| || || || ||||||||| Sbjct 5732604 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAA 5732663 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || |||| Sbjct 5732664 CATCCAGAAGGAGTCGACCTTGCA 5732687 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || ||||| |||||||| | || ||||| | | Sbjct 5730911 ATGCAGATCTTCGTGAAGACGTTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCGTCG 5730970 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| | |||| || || | ||||| ||||| ||||| | || || Sbjct 5730971 GACACGATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCA 5731029 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| || || || ||||||||| Sbjct 5731030 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAA 5731089 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || |||| Sbjct 5731090 CATCCAGAAGGAGTCGACCTTGCA 5731113 Score = 116 bits (128), Expect = 4e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 40693 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGAC 40752 || || ||||| || ||||| || ||||| |||||||| | || ||||| | | ||| Sbjct 5732260 CAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTGGAGGTCGAGCCGTCGGAC 5732319 Query 40753 A-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811 | | || |||| | |||| || || | ||||| ||||| ||||| | || ||||| Sbjct 5732320 ACGATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCA 5732378 Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871 || || |||| ||| ||||| |||||||| |||| || || || |||||||||||| Sbjct 5732379 GCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAACAT 5732438 Query 40872 CCAGAAGGAGGCCACGCTGCA 40892 |||||||||| | || |||| Sbjct 5732439 CCAGAAGGAGTCGACCTTGCA 5732459 Score = 116 bits (128), Expect = 4e-21 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || |||||||| | || || || |||| | Sbjct 10199191 ATGCAAATCTTCGTCAAGACCCTGACCGGAAAGACCATCACGCTGGAAGTGGA-GCCATC 10199133 Query 40750 G-ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 | ||| | | |||| | |||| || |||| || || || |||||||| |||| | Sbjct 10199132 GGACACTATCGAGAACG-TGAAGGCTAAGATTCAGGATAAGGAAGGCATCCCTCCGGATC 10199074 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || |||| ||| || || |||||||| || | || ||||| ||||||| Sbjct 10199073 AGCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGTACCCTGTCAGACTACA 10199014 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 | |||||||||||| |||| || ||||| ||| Sbjct 10199013 ATATCCAGAAGGAGTCCACTCTCCATCTGGTG 10198982 Score = 102 bits (112), Expect = 8e-17 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || ||||||||||| || || ||||| ||||| ||||||||| ||| | Sbjct 10201652 ATGCAGATTTTTGTAAAAACGCTAACCGGAAAAACGATCACGCTCGACGTCGCCGCCTCG 10201593 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAA---GAGGGCATCCCCGCGGAC 40806 || | || | | |||| ||||| ||| || ||||| || | | ||| Sbjct 10201592 GAAACGGTTCTAGATATCAAAAGTAAAAT---CGAGGAACGCGAGGGTATTGCACCAGAC 10201536 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || || |||||| ||| ||||| ||||||||||| | || | || ||| ||| Sbjct 10201535 CAACAGCGCATCATCTTCGCCGGCAAGCAGCTGGACGATGGCCGAATTATCTCCGATTAC 10201476 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| | | | ||| ||||||| ||| |||| |||| ||| ||| Sbjct 10201475 AACATCCAGCACGGATCGACGATGCATCTGGTGCTGCGGTTGAAGGGTGGC 10201425 >seq934 Length=8401807 Score = 123 bits (136), Expect = 3e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| ||||| ||||| |||||||| | || ||||| || | Sbjct 268649 ATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACGCTTGAGGTCGAGCCCTCG 268590 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | |||| || || | ||||| ||||| |||||| |||| ||| Sbjct 268589 GACACGATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGATCAG 268530 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| |||||||| || | ||||| || ||||||||| Sbjct 268529 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCGGACTACAAC 268470 Query 40870 ATCCAGAAGGA 40880 ||||||||||| Sbjct 268469 ATCCAGAAGGA 268459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515211046656160