Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq712 131 1e-25 seq490 125 5e-24 seq934 123 2e-23 >seq712 Length=12093160 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||||| || | || || ||||| ||||||||||||||| Sbjct 3459567 CCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 3459626 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281 ||| ||| | || |||| ||||||||| ||||| ||||| |||||||| | || |||| Sbjct 3459627 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGCGGG 3459686 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | || | |||| ||| | | ||||| Sbjct 3459687 -ATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 3459745 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | || || || || || ||||| ||||| || |||||||||||| Sbjct 3459746 CTCAAGGGTAATCGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATC 3459794 >seq490 Length=13136524 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| || || || ||||| ||||||||||||||| Sbjct 5732711 CCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 5732652 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| |||| |||| ||||||||| ||||| || || |||||||| || | |||| Sbjct 5732651 AGAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 5732592 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | |||| || | || ||||| Sbjct 5732591 -ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATCGTGTCCGACGGCTCGAC 5732533 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || ||||| ||||||||||| Sbjct 5732532 CTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 5732485 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| || || || ||||| ||||||||||||||| Sbjct 5731137 CCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 5731078 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| |||| |||| ||||||||| ||||| || || |||||||| || | |||| Sbjct 5731077 AGAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 5731018 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | |||| || | || ||||| Sbjct 5731017 -ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATCGTGTCCGACGGCTCGAC 5730959 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| |||||||| ||||| || | || ||||| |||||||||||| Sbjct 5730958 CTCCAGAGTGATGGTCTTGCCAGTCAACGTCTTCACGAAGATCTGCATC 5730910 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | || |||| ||| || || || ||||| |||||||||||||| Sbjct 5732940 TCCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGA 5732881 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 ||| ||| |||| |||| ||| ||||| ||||| || || |||||||| || | ||| Sbjct 5732880 CAGAGTACGTCCGTCCTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGG 5732821 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | | ||||||||| ||||| ||| | | | |||| || | || |||| Sbjct 5732820 G-ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATCGTGTCCGACGGCTCGA 5732762 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| |||||||| ||||| || || || ||||| ||||||||||| Sbjct 5732761 CCTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 5732713 Score = 120 bits (132), Expect = 2e-22 Identities = 163/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| || || || ||||| ||||||||||||||| Sbjct 5732483 CCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 5732424 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| |||| |||| ||||||||| ||||| || || |||||||| || | |||| Sbjct 5732423 AGAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 5732364 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | |||| || | || ||||| Sbjct 5732363 -ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATCGTGTCCGACGGCTCGAC 5732305 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTG 34386 |||| |||||||| ||||| || || || ||||| |||||||| Sbjct 5732304 CTCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTG 5732260 >seq934 Length=8401807 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || ||| ||||| ||||||||||| ||||| ||| | || Sbjct 268438 AGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCCGACAGAGTGCGGCCATCC 268497 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||||||| || || || || |||||||| || ||| | | ||||||||| Sbjct 268498 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCCGGGGGGATTCCCTCCTTGTCC 268557 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | |||| || | | ||||| || | ||||||||| Sbjct 268558 TGGATCTTGGCCTTCACATTTTCGATCGTGTCCGAGGGCTCGACCTCAAGCGTGATGGTC 268617 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||||||||| |||||||| || ||||||||| Sbjct 268618 TTGCCGGTGAGTGTTTTCACGAAAATCTGCATC 268650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323067015200960