Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq391 334 1e-86 seq302 163 4e-35 >seq391 Length=2819257 Score = 334 bits (370), Expect = 1e-86 Identities = 1189/1850 (64%), Gaps = 24/1850 (1%) Strand=Plus/Minus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 ||||| || || || | ||||||||| || || || || || | |||| ||| || Sbjct 157492 GCGGGCTTGGTGCGCAAATAGTACATGCCAGTCTTCAGGCCCATCTTCCACGCGTGGAAG 157433 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 ||||| ||| || ||| || |||| || || | ||||| || | || || Sbjct 157432 TGCATTGACGTCAGCTTGCCGTAGTTCGGTTCCGCCACGTGGATGTTGAACGACTGCGAC 157373 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 ||||||||||| || |||| ||| || ||||| | ||| ||| || | ||| ||| Sbjct 157372 TGATCGATGAACGCACCCCGGTCGGCTGCCATCTGGATGCACGTTTTCACCGAAATCTCC 157313 Query 62247 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG-GTTTG-TATTCTGAATGGAT 62303 |||| ||||| || | |||| | | |||| | | ||| | | ||||| || || Sbjct 157312 CAAACCGTTTTGTACAGATCGCGCACTTCCTTCGGTATTTGTTCGATGTTCTGGATCGAA 157253 Query 62304 CCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 62363 || | ||| || | ||||| || ||||| | ||| | | ||| | | Sbjct 157252 CCGTTGTGGGCCAGGATTGTGTTCTTCATATCATCGTCCCACAGACCGTGCGTGGTCAGA 157193 Query 62364 ACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAA 62423 | | | || || |||| || || || || || || |||| || | ||| |||| Sbjct 157192 TCCTTGATCAGGTGGTGGTTCACCACCTGAAACTCGCCCGACAGAACGCGCCGGTTGTAG 157133 Query 62424 ATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 62483 | || || ||||| || | |||||| || || ||||||||||| || || || || Sbjct 157132 ACGTTGGACGTGTACGGCTCGAACGACTCGTTGTTGCCCAAAATTTGTGCCGTCGAAGCC 157073 Query 62484 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 62543 |||||||| || || | || | || | | ||||| | | || || || || Sbjct 157072 GTCGGCATCGGCGCGAGCAGCAGTGAGTTGCGCACACCGTGTTTGGCAATCTTTTCCTTC 157013 Query 62544 AGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATA 62603 || |||||||||| || |||| |||||| || || |||||| Sbjct 157012 AGCGTCGCCCAATTCCACAGGTCCGTCGGTACCTTGTTCCACATGTCGTACTGCAGAATA 156953 Query 62604 CCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTA 62663 || || || | |||||| | || || || || ||||| |||| | || | | Sbjct 156952 CCCTTGCTCACCGGAGATCCTTCGTACGTCTCGTACGGTCCCTCCTGAGCGGCCATCTCG 156893 Query 62664 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGT 62723 || || || || | ||||| || || ||||| ||||| |||| || ||| || | ||| Sbjct 156892 CAGCTAGCTTCCAGCGCACCATAGTAGATGGTCTCAAATATCTGCTGATTGAGCTTTTGC 156833 Query 62724 GCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACA 62783 || |||| || || | || | | | || ||||| || || | || || || Sbjct 156832 GCCTCCGCACTCTCGTACGGGAAGCCCATCAAGATGAACGCATCAGCCATACCCTGGACG 156773 Query 62784 CCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAA 62843 || |||||||| || | || | | | || ||| | ||||| || | || || | Sbjct 156772 CCGATACCGATCGGACGGTGGCGCATGTTCGAGCGCTTCGCTTCCGGCACCGGGTAGAAG 156713 Query 62844 TTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGT 62900 || | || ||||| || || | || | | || ||| ||| | || || ||||| Sbjct 156712 TTCACGTCGATAATCTTGTTCAAGTTGCGCGTCACGATT---TTGGCTACCTCTTTCAGC 156656 Query 62901 TTGAGAAAATCAAATCGCCCATCTATT---ACAAACATGTTCAATGCAACAGATGCCAGA 62957 || |||||| | | || || |||||||||| |||| || ||||| Sbjct 156655 TTCGCGAAATCATACGTACGGTCGGGCTGGACGAACATGTTCAGCGCAATCGAGGCCAGG 156596 Query 62958 TTACACACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGATTAC 63015 || ||||| || || || | | || || || | | ||||| |||||||| ||| Sbjct 156595 TTGCACACCGCCACTTCGTC--CTTCGACGAGTACTCCACAATCTCGGTGCAAAGGTTAG 156538 Query 63016 TACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 63075 |||||||| || || | |||||||| || || || || ||||| ||||| || | Sbjct 156537 AGCACTTGATGGTGCCGATGTTTTGTTGGTTGCTTTTGCGATTGCACGCGTCCTTGTACA 156478 Query 63076 GAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAG 63135 | ||| | || || || || | ||| ||||| || ||||| ||| | | | | Sbjct 156477 GCATGTACGGTACGCCCGTCTCCACCTGGGATTCGATGATCGCAAACCACAGATCCTGCG 156418 Query 63136 CCTTTA--TTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAA 63193 |||||| | ||| | | | | || |||| || || ||||| ||||| Sbjct 156417 CCTTTACCTGGCGGAT--GAAGCGGCCCTCCTTTTCATAACCCGTGTACAACTTCTCGAA 156360 Query 63194 CTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTC 63253 ||| || ||||| || | |||||| ||||| || | ||| |||||||| |||| Sbjct 156359 CTCTTCGCCCCACGAATCGGCCAATCCGGGACAGTCGTGCGGGCACATCAAACTCCACGT 156300 Query 63254 TCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATC 63313 | ||| ||| ||| || | ||| || ||||| || ||||| || || ||| | || Sbjct 156299 TTCGTTCGCCTCCACGCGCTGCATGAACAGATCCGGTATCCAGAGCGCGTAAAACATGTC 156240 Query 63314 TCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 63373 |||| | ||||| || || || || || || ||||| | ||| | | | ||| Sbjct 156239 CCTTGCGCGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCTAAAAACTCAAACACATC 156180 Query 63374 AGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATC 63433 |||||||| |||| ||| ||||| | | || ||||| || || || |||||||| Sbjct 156179 GCCGTGCCACGGCTCCAGGTAGATGGCAAACGCACCTGGCCGCTTATTGCCGCCCTGATC 156120 Query 63434 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACC 63493 | ||| | || || || || || || | || ||| || | | ||||| || || || Sbjct 156119 GACGTACCGTGCCGTATTGTTGTACACGCGCAGCATCGGTACCAACCCGTTCGAAATTCC 156060 Query 63494 ATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATT 63551 || || || ||||| || ||| | || || || | | | || | | || || Sbjct 156059 GTTCGTGCCAGAGATGTACGTTCCCTTCGCCCGGATGCAGTGCACGTTCA--GCCCGATG 156002 Query 63552 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATG 63611 || || ||| || ||||| | |||||| | || | |||||| |||||||| || ||| Sbjct 156001 CCACCGGCCGACTTGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAGATGCCCTCGATG 155942 Query 63612 CTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCA 63671 || || ||| |||| | || ||||| || |||| ||| |||| || |||| Sbjct 155941 CTGTCGTCGGACATGGTCAGCAGAAAGCAAGACGACAGCTGGGGACGCTGCGTGGCCGCC 155882 Query 63672 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 63731 || | ||| || ||||| || ||||| | || || || |||||||||||||| Sbjct 155881 GCGAACATGGTCGGCGAAGCATGGGTAAAGTAACGCTCCGAGAGCAGATTGTACGTCTCG 155822 Query 63732 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 63791 || |||| || || ||| || || || | ||||| ||||| | ||| ||||| Sbjct 155821 ATCGCTGCCTCGATGTCCGTGCCGTGGATGCCGATGGCGACGCGCATCAGCATATGCTGC 155762 Query 63792 GGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAA 63851 || || || ||||| ||| || || |||||||| || || |||| ||||| || Sbjct 155761 GGCCTCTCGACAATCTTGCCCTTGATCTTCAACAAATACGAACGCTCCAGGGTTTTGAAG 155702 Query 63852 CCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 || ||||||||||| ||||| || |||||||||||| ||||||| || Sbjct 155701 CCGAAATAGTTGTACCCGAAGTCACGATCGTAAATAATAGCCGAATTTAG 155652 >seq302 Length=5740867 Score = 163 bits (180), Expect = 4e-35 Identities = 364/544 (67%), Gaps = 3/544 (1%) Strand=Plus/Plus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 ||||||| || || ||||| |||||||| |||||||| | || || ||||| || Sbjct 73029 AACATCAGGCAGGCAAAATCACAGTGCAGTCCCTCGTCACGCGAGATCAACTCGTTCGAG 73088 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 ||||| || || ||||| ||||||||||| || ||||| || |||| ||||| ||| Sbjct 73089 AACGTCAGACCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATGGCCGCGAAGCTTCCA 73148 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--GC 33750 |||||||| || || || ||||| || || | | || ||| ||| | ||| || Sbjct 73149 CTGAAGAAGATGCCCTCGACGGCAGCGAACGCCACCACTCGCTCGCCAAAGTTGGCCTGC 73208 Query 33751 TGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 | | | ||||| || | ||||| ||||||||||| || || || || | |||||| Sbjct 73209 TTGCTCGAGATCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTCACGCACGGGAGCGTTTCG 73268 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 || || || || || || | || || || || || || ||||||| || Sbjct 73269 ATCGCGTTGAACAGGTACTCCCGCTCCTTCGGGTCGCGAATGTACGTGTCGATCAGCAGC 73328 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 ||||| || || | ||| || || || |||||||| |||||||| || | |||| Sbjct 73329 GAGTACATCTCGCTGTGCACGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGAGCC 73388 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 || || | |||||| || | || || || | | ||| || ||||| || || || Sbjct 73389 TCCGTCACCTGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCGTTCACGATACCGTCC 73448 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 34049 ||| ||||| || |||| || || || || | ||| || | || | Sbjct 73449 GAGGCGGCAAAGAAGGCCAGCACGTGCGAGATGAAGTGACGCTCGCTCGGCTTCAGCGAA 73508 Query 34050 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 | ||| || || || || || || | ||||| |||||||| ||||| || || || || Sbjct 73509 TCCCAGTCCTTCATGTCCTTCGAGAGGTCCACCTCTTCCACGGTCCAGAAGGAAGCTTCC 73568 Query 34110 GCCT 34113 |||| Sbjct 73569 GCCT 73572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629807633136480