Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq391 315 9e-81 seq302 140 4e-28 >seq391 Length=2819257 Score = 315 bits (348), Expect = 9e-81 Identities = 1184/1850 (64%), Gaps = 24/1850 (1%) Strand=Plus/Minus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919 ||||| || || || | ||||||||| || || || || || | |||| ||| || Sbjct 157492 GCGGGCTTGGTGCGCAAATAGTACATGCCAGTCTTCAGGCCCATCTTCCACGCGTGGAAG 157433 Query 64920 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 64979 ||||| ||| || ||| || |||| || || | ||||| || | || || Sbjct 157432 TGCATTGACGTCAGCTTGCCGTAGTTCGGTTCCGCCACGTGGATGTTGAACGACTGCGAC 157373 Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 ||||||||||| || |||| ||| || ||||| | ||| ||| || | ||| ||| Sbjct 157372 TGATCGATGAACGCACCCCGGTCGGCTGCCATCTGGATGCACGTTTTCACCGAAATCTCC 157313 Query 65040 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG-GTTTG-TATTCTGAATGGAT 65096 |||| ||||| || | |||| | | |||| | | ||| | | ||||| || || Sbjct 157312 CAAACCGTTTTGTACAGATCGCGCACTTCCTTCGGTATTTGTTCGATGTTCTGGATCGAA 157253 Query 65097 CCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAA 65156 || | |||| || | ||||| || ||||| | ||| | | ||| | | Sbjct 157252 CCGTTGTGGGCCAGGATTGTGTTCTTCATATCATCGTCCCACAGACCGTGCGTGGTCAGA 157193 Query 65157 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 65216 | | | || || | || || || ||||| || || |||| || | ||| |||| Sbjct 157192 TCCTTGATCAGGTGGTGGTTCACCACCTGAAACTCGCCCGACAGAACGCGCCGGTTGTAG 157133 Query 65217 ATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 65276 | || || ||||| || | ||||| || || ||||||||||| || || || || Sbjct 157132 ACGTTGGACGTGTACGGCTCGAACGACTCGTTGTTGCCCAAAATTTGTGCCGTCGAAGCC 157073 Query 65277 GTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTT 65336 |||||||| || || | || | || | | ||||| | | || || || || Sbjct 157072 GTCGGCATCGGCGCGAGCAGCAGTGAGTTGCGCACACCGTGTTTGGCAATCTTTTCCTTC 157013 Query 65337 AGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNnnnnnnnNNNTTGTAGAATA 65396 || | |||||||||| || |||| |||||| || |||||| Sbjct 157012 AGCGTCGCCCAATTCCACAGGTCCGTCGGTACCTTGTTCCACATGTCGTACTGCAGAATA 156953 Query 65397 CCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCA 65456 || || || | |||||| | || || ||||| ||||| |||| | || | || Sbjct 156952 CCCTTGCTCACCGGAGATCCTTCGTACGTCTCGTACGGTCCCTCCTGAGCGGCCATCTCG 156893 Query 65457 CAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGT 65516 || || || || | ||||| || || ||||| || || |||| || ||| || | ||| Sbjct 156892 CAGCTAGCTTCCAGCGCACCATAGTAGATGGTCTCAAATATCTGCTGATTGAGCTTTTGC 156833 Query 65517 GCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACA 65576 || ||| || || | || | | | || ||||| || || | || || || Sbjct 156832 GCCTCCGCACTCTCGTACGGGAAGCCCATCAAGATGAACGCATCAGCCATACCCTGGACG 156773 Query 65577 CCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAA 65636 || |||||||| || | || | | | || ||| | ||||| || | || || | Sbjct 156772 CCGATACCGATCGGACGGTGGCGCATGTTCGAGCGCTTCGCTTCCGGCACCGGGTAGAAG 156713 Query 65637 TTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGT 65693 || | || ||||| || || | || | | || ||| ||| | || || ||||| Sbjct 156712 TTCACGTCGATAATCTTGTTCAAGTTGCGCGTCACGATT---TTGGCTACCTCTTTCAGC 156656 Query 65694 TTGAGAAAATCAAAT---CGCTCATCTATTACAAACATGTTCAATGCAACAGATGCCAGA 65750 || |||||| | || || || |||||||||| |||| || ||||| Sbjct 156655 TTCGCGAAATCATACGTACGGTCGGGCTGGACGAACATGTTCAGCGCAATCGAGGCCAGG 156596 Query 65751 TTACAAACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGATTAC 65808 || || || || || || | | || || || | | ||||| |||||||| ||| Sbjct 156595 TTGCACACCGCCACTTCGTC--CTTCGACGAGTACTCCACAATCTCGGTGCAAAGGTTAG 156538 Query 65809 TACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 65868 ||||||||||| || | |||||||| || || || || ||||| ||||| || | Sbjct 156537 AGCACTTGATGGTGCCGATGTTTTGTTGGTTGCTTTTGCGATTGCACGCGTCCTTGTACA 156478 Query 65869 GAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAG 65928 | ||| | || || || || | ||| ||||| || ||||| ||| | | | | Sbjct 156477 GCATGTACGGTACGCCCGTCTCCACCTGGGATTCGATGATCGCAAACCACAGATCCTGCG 156418 Query 65929 CCTTTA--TTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAA 65986 |||||| | ||| | | | || |||| || || ||||| ||||| Sbjct 156417 CCTTTACCTGGCGGAT--GAAGCGGCCCTCCTTTTCATAACCCGTGTACAACTTCTCGAA 156360 Query 65987 CTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTC 66046 ||| || ||||| || | ||||||| ||||| || | ||| |||||||| |||| Sbjct 156359 CTCTTCGCCCCACGAATCGGCCAATCCGGGACAGTCGTGCGGGCACATCAAACTCCACGT 156300 Query 66047 TCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATC 66106 | ||| ||| ||| || | ||| || ||||| || ||||| || || ||| | || Sbjct 156299 TTCGTTCGCCTCCACGCGCTGCATGAACAGATCCGGTATCCAGAGCGCGTAAAACATGTC 156240 Query 66107 TCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATC 66166 || | | ||||| || || || || || || ||||| | ||| | | | ||| Sbjct 156239 CCTTGCGCGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCTAAAAACTCAAACACATC 156180 Query 66167 ATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATC 66226 |||||||| |||| ||| ||||| | | || ||||| || || || |||||||| Sbjct 156179 GCCGTGCCACGGCTCCAGGTAGATGGCAAACGCACCTGGCCGCTTATTGCCGCCCTGATC 156120 Query 66227 TATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACC 66286 | ||| | || || || || || || | || ||| || | | || || || | || Sbjct 156119 GACGTACCGTGCCGTATTGTTGTACACGCGCAGCATCGGTACCAACCCGTTCGAAATTCC 156060 Query 66287 ATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT--ATTACTAATTGATAGACCTATT 66344 || || || ||||| || |||| | || || || | | | || | | || || Sbjct 156059 GTTCGTGCCAGAGATGTACGTTCCCTTCGCCCGGATGCAGTGCACGTTCA--GCCCGATG 156002 Query 66345 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATA 66404 || || ||| || ||||| | |||||| | || | ||| || ||||||||||| || Sbjct 156001 CCACCGGCCGACTTGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAGATGCCCTCGATG 155942 Query 66405 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 66464 || || || |||| | || ||||| || |||| ||| |||| || |||| Sbjct 155941 CTGTCGTCGGACATGGTCAGCAGAAAGCAAGACGACAGCTGGGGACGCTGCGTGGCCGCC 155882 Query 66465 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 66524 || | ||| || ||||| || ||||| | || || || |||||||||||||| Sbjct 155881 GCGAACATGGTCGGCGAAGCATGGGTAAAGTAACGCTCCGAGAGCAGATTGTACGTCTCG 155822 Query 66525 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 66584 || |||| || || ||| || || || | ||||| ||||| | ||| ||||| Sbjct 155821 ATCGCTGCCTCGATGTCCGTGCCGTGGATGCCGATGGCGACGCGCATCAGCATATGCTGC 155762 Query 66585 GGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAA 66644 || || || || |||||| || || |||||||| || || |||| ||||| || Sbjct 155761 GGCCTCTCGACAATCTTGCCCTTGATCTTCAACAAATACGAACGCTCCAGGGTTTTGAAG 155702 Query 66645 CCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 66694 || ||||||||||| ||||| || |||||||||||| |||| || || Sbjct 155701 CCGAAATAGTTGTACCCGAAGTCACGATCGTAAATAATAGCCGAATTTAG 155652 >seq302 Length=5740867 Score = 140 bits (154), Expect = 4e-28 Identities = 360/546 (66%), Gaps = 7/546 (1%) Strand=Plus/Plus Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 ||||||| || || ||||| ||||| || |||||||| | || || ||||| || Sbjct 73029 AACATCAGGCAGGCAAAATCACAGTGCAGTCCCTCGTCACGCGAGATCAACTCGTTCGAG 73088 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 ||||| || || ||||| ||||||||||| || ||||| || |||| ||| || |||| Sbjct 73089 AACGTCAGACCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATGGCCGCGAAGCTTCCA 73148 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 36328 ||||| || || || || || || || || | | || ||| ||| | ||| ||| Sbjct 73149 CTGAAGAAGATGCCCTCGACGGCAGCGAACGCCACCACTCGCTCGCCAAAGTTGGC-CTG 73207 Query 36329 TCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 36383 | || ||||| || | ||||| ||||||||||| || || || || | || | Sbjct 73208 -CTTGCTCGAGATCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTCACGCACGGGAGCGTTT 73266 Query 36384 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 36443 | || || || || || || | || || || || || || || |||| | Sbjct 73267 CGATCGCGTTGAACAGGTACTCCCGCTCCTTCGGGTCGCGAATGTACGTGTCGATCAGCA 73326 Query 36444 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAG 36503 | ||||| || || | ||| || || || || ||||| |||||||| || | || Sbjct 73327 GCGAGTACATCTCGCTGTGCACGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGAG 73386 Query 36504 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 36563 |||| || | ||| || || | || || || | | ||| || ||||| || |||| Sbjct 73387 CCTCCGTCACCTGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCGTTCACGATACCGT 73446 Query 36564 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTT 36623 | ||| ||||| || |||| || || || || | ||| | || | || Sbjct 73447 CCGAGGCGGCAAAGAAGGCCAGCACGTGCGAGATGAAGTGACGCTCGCTCGGCTTCAGCG 73506 Query 36624 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 36683 || ||| || || || || || || | ||||| |||||||| ||||| || || || | Sbjct 73507 AATCCCAGTCCTTCATGTCCTTCGAGAGGTCCACCTCTTCCACGGTCCAGAAGGAAGCTT 73566 Query 36684 CTGCCT 36689 | |||| Sbjct 73567 CCGCCT 73572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658162384415440