Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq391 300 2e-76 seq302 172 8e-38 >seq391 Length=2819257 Score = 300 bits (332), Expect = 2e-76 Identities = 1187/1852 (64%), Gaps = 28/1852 (2%) Strand=Plus/Minus Query 78739 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAA 78798 ||||| || || || | ||||||||| || || || || || | |||| ||| ||| Sbjct 157492 GCGGGCTTGGTGCGCAAATAGTACATGCCAGTCTTCAGGCCCATCTTCCACGCGTGGAAG 157433 Query 78799 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 78858 ||||| ||| || ||| || |||| || || | ||||| || | || || Sbjct 157432 TGCATTGACGTCAGCTTGCCGTAGTTCGGTTCCGCCACGTGGATGTTGAACGACTGCGAC 157373 Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 ||||||||||| || |||| ||| || ||||| | ||| ||| || | ||| ||| Sbjct 157372 TGATCGATGAACGCACCCCGGTCGGCTGCCATCTGGATGCACGTTTTCACCGAAATCTCC 157313 Query 78919 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG-GTTTG-TATTCTGAATGGAT 78975 |||| ||||| || | |||| | | |||| | | ||| | | ||||| || || Sbjct 157312 CAAACCGTTTTGTACAGATCGCGCACTTCCTTCGGTATTTGTTCGATGTTCTGGATCGAA 157253 Query 78976 CCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAA 79035 || | |||| || | ||||| || || || | ||| | | ||| | | Sbjct 157252 CCGTTGTGGGCCAGGATTGTGTTCTTCATATCATCGTCCCACAGACCGTGCGTGGTCAGA 157193 Query 79036 ACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAA 79095 | | | || || | || || || ||||| || || |||| || | ||| |||| Sbjct 157192 TCCTTGATCAGGTGGTGGTTCACCACCTGAAACTCGCCCGACAGAACGCGCCGGTTGTAG 157133 Query 79096 ATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCC 79155 | || || || || || | ||| || || || ||||||||||| || || || ||| Sbjct 157132 ACGTTGGACGTGTACGGCTCGAACGACTCGTTGTTGCCCAAAATTTGTGCCGTCGAAGCC 157073 Query 79156 GTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTT 79215 || ||||| || || | || | || | | ||||| | || || || || Sbjct 157072 GTCGGCATCGGCGCGAGCAGCAGTGAGTTGCGCACACCGTGTTTGGCAATCTTTTCCTTC 157013 Query 79216 AGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATA 79275 || | |||||| ||| || || | ||| || ||||| | || || || |||||| Sbjct 157012 AGCGTCGCCCAATTCCACAGGTCCGTCGGTACCTTGTTCCACATGTCGTACTGCAGAATA 156953 Query 79276 CCGTTACT-AGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTC 79334 || || || | || | |||||| ||| || || || ||||| |||| |||| | || Sbjct 156952 CCCTTGCTCACCGGA-GATCCTTCGTACGTCTCGTACGGTCCCTCCTGAGCGGCCATCTC 156894 Query 79335 ACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTG 79394 || || || || | || || || || ||||| || || |||| || |||||| | ||| Sbjct 156893 GCAGCTAGCTTCCAGCGCACCATAGTAGATGGTCTCAAATATCTGCTGATTGAGCTTTTG 156834 Query 79395 TGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAAC 79454 || || || || | || | | | || ||||| || || | || || || Sbjct 156833 CGCCTCCGCACTCTCGTACGGGAAGCCCATCAAGATGAACGCATCAGCCATACCCTGGAC 156774 Query 79455 ACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATA 79514 || |||||||| || | || | | | || || | ||||| || | || || | Sbjct 156773 GCCGATACCGATCGGACGGTGGCGCATGTTCGAGCGCTTCGCTTCCGGCACCGGGTAGAA 156714 Query 79515 ATTAATATCTATAATTTTATTGAGATTCC---TGACTATTACTTTGACCACATCCTTTAG 79571 || | || ||||| || || | || | | || ||| ||| | || || || || Sbjct 156713 GTTCACGTCGATAATCTTGTTCAAGTTGCGCGTCACGATT---TTGGCTACCTCTTTCAG 156657 Query 79572 TTTGAGAAAATCAAATC----GTCCATCTATTACAAACATGTTCAACGCGACAGATGCCA 79627 || |||||| | ||| || || |||||||||| ||| | || |||| Sbjct 156656 CTTCGCGAAATCATACGTACGGTCGGGCTGG-ACGAACATGTTCAGCGCAATCGAGGCCA 156598 Query 79628 GATTACAAACGGCTACCTCATTAGCATC--CGCATATTGTATTATTTCAGTGCAGAGGTT 79685 | || || || || || || | | || || || | | || || ||||| ||||| Sbjct 156597 GGTTGCACACCGCCACTTCGTC--CTTCGACGAGTACTCCACAATCTCGGTGCAAAGGTT 156540 Query 79686 ACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATA 79745 | ||||| ||||| || | |||||||| || || || || ||||| ||||| || Sbjct 156539 AGAGCACTTGATGGTGCCGATGTTTTGTTGGTTGCTTTTGCGATTGCACGCGTCCTTGTA 156480 Query 79746 AAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCG 79805 || ||| |||| || || || | ||| ||||| || ||||| ||| | | | Sbjct 156479 CAGCATGTACGGTACGCCCGTCTCCACCTGGGATTCGATGATCGCAAACCACAGATCCTG 156420 Query 79806 AGCCTTTA--TTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCG 79863 ||||||| | || || | | || |||| || || || || ||| Sbjct 156419 CGCCTTTACCTGGCGGA--TGAAGCGGCCCTCCTTTTCATAACCCGTGTACAACTTCTCG 156362 Query 79864 AACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCAC 79923 ||||| || ||||| |||| | ||||| ||||| |||| || |||||||| |||| Sbjct 156361 AACTCTTCGCCCCACGAATCGGCCAATCCGGGACAGTCGTGCGGGCACATCAAACTCCAC 156302 Query 79924 TCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 79983 | | | ||| || || | ||| || ||||| || ||||| || || ||| | Sbjct 156301 GTTTCGTTCGCCTCCACGCGCTGCATGAACAGATCCGGTATCCAGAGCGCGTAAAACATG 156242 Query 79984 TCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 80043 || || | | |||||| || || || || || || ||||| | ||| | | | | Sbjct 156241 TCCCTTGCGCGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCTAAAAACTCAAACACA 156182 Query 80044 TCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGA 80103 || |||||||| |||| ||| ||||| | | || || || || || || |||||| Sbjct 156181 TCGCCGTGCCACGGCTCCAGGTAGATGGCAAACGCACCTGGCCGCTTATTGCCGCCCTGA 156122 Query 80104 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTA 80163 || | ||| | || || || || || || | || ||| || | | || || || | Sbjct 156121 TCGACGTACCGTGCCGTATTGTTGTACACGCGCAGCATCGGTACCAACCCGTTCGAAATT 156062 Query 80164 CCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTA 80221 || || || || ||||| || |||| | || || || | | | || | | || | Sbjct 156061 CCGTTCGTGCCAGAGATGTACGTTCCCTTCGCCCGGATGCAGTGCACGTTCA--GCCCGA 156004 Query 80222 TTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTA 80281 | || || ||| || ||||| | |||||| | || | ||| || ||||||||||| | Sbjct 156003 TGCCACCGGCCGACTTGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAGATGCCCTCGA 155944 Query 80282 TGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCG 80341 |||| || || |||| | || ||||| || |||| ||| |||| || ||| Sbjct 155943 TGCTGTCGTCGGACATGGTCAGCAGAAAGCAAGACGACAGCTGGGGACGCTGCGTGGCCG 155884 Query 80342 CATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCT 80401 | || | ||| || ||||| || ||||| | || || || ||||||||||||| Sbjct 155883 CCGCGAACATGGTCGGCGAAGCATGGGTAAAGTAACGCTCCGAGAGCAGATTGTACGTCT 155824 Query 80402 CAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCT 80461 | || |||| || || ||| || || || | ||||| ||||| | ||| |||| Sbjct 155823 CGATCGCTGCCTCGATGTCCGTGCCGTGGATGCCGATGGCGACGCGCATCAGCATATGCT 155764 Query 80462 GAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAA 80521 | || || || || |||||| || || |||||||| || || |||| ||||| | Sbjct 155763 GCGGCCTCTCGACAATCTTGCCCTTGATCTTCAACAAATACGAACGCTCCAGGGTTTTGA 155704 Query 80522 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573 | || ||||||||||| ||||| || |||||||||||| |||| || || Sbjct 155703 AGCCGAAATAGTTGTACCCGAAGTCACGATCGTAAATAATAGCCGAATTTAG 155652 >seq302 Length=5740867 Score = 172 bits (190), Expect = 8e-38 Identities = 366/544 (67%), Gaps = 3/544 (1%) Strand=Plus/Plus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 ||||||| || || ||||| |||||||| |||||||| | || | ||||| || Sbjct 73029 AACATCAGGCAGGCAAAATCACAGTGCAGTCCCTCGTCACGCGAGATCAACTCGTTCGAG 73088 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 ||||| || || ||||| ||||||||||| || ||||| || |||| ||| || ||| Sbjct 73089 AACGTCAGACCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATGGCCGCGAAGCTTCCA 73148 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC--GC 50128 |||||||| || || || || || || || || | || ||| ||| | |||| || Sbjct 73149 CTGAAGAAGATGCCCTCGACGGCAGCGAACGCCACCACTCGCTCGCCAAAGTTGGCCTGC 73208 Query 50129 TGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 | | | ||||| || | ||||| ||||||||||| || || || || | |||||| Sbjct 73209 TTGCTCGAGATCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTCACGCACGGGAGCGTTTCG 73268 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 || || || || || || | || || || || || || ||||||| || Sbjct 73269 ATCGCGTTGAACAGGTACTCCCGCTCCTTCGGGTCGCGAATGTACGTGTCGATCAGCAGC 73328 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 ||||| || || | ||| || || || |||||||| |||||||| || | |||| Sbjct 73329 GAGTACATCTCGCTGTGCACGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGAGCC 73388 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 || || | |||||| || | || || || | | ||| || ||||| || ||||| Sbjct 73389 TCCGTCACCTGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCGTTCACGATACCGTCC 73448 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA 50427 ||| ||||| || |||| || || || || || ||| | || | || | Sbjct 73449 GAGGCGGCAAAGAAGGCCAGCACGTGCGAGATGAAGTGACGCTCGCTCGGCTTCAGCGAA 73508 Query 50428 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 50487 | ||| || || || || || || | || || |||||||| ||||| || || || || Sbjct 73509 TCCCAGTCCTTCATGTCCTTCGAGAGGTCCACCTCTTCCACGGTCCAGAAGGAAGCTTCC 73568 Query 50488 GCCT 50491 |||| Sbjct 73569 GCCT 73572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718257433396240