Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq490 89.7 4e-13 >seq490 Length=13136524 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||||||||| | | ||||| || | || |||||| || | ||||| |||||| Sbjct 5732939 CCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 5732880 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| |||| ||||||||||| || |||| ||||| ||||| | ||| Sbjct 5732879 AGAGTACGTCCGTCCTCCAGCTGTTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 5732820 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | ||| ||||| | |||||| Sbjct 5732819 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATCGTGTCCGACGGCTCGACC 5732760 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || || || ||||| || || ||||| Sbjct 5732759 TCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 5732713 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||||||||| | | ||||| || | || |||||| || | ||||| |||||| Sbjct 5732711 CCTCCACGCAGACGGAGGACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 5732652 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| |||| || |||||||| || |||| ||||| ||||| | ||| Sbjct 5732651 AGAGTACGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 5732592 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || |||| | || || | ||| ||||| | |||||| Sbjct 5732591 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATCGTGTCCGACGGCTCGACC 5732532 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || || || ||||| || || ||||| Sbjct 5732531 TCCAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 5732485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381363715705428