Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20dirus_20[genbank_20GCA_5F000349145.1_202013-03-28] 1,266 sequences; 216,307,690 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq391 284 2e-71 seq302 152 7e-32 >seq391 Length=2819257 Score = 284 bits (314), Expect = 2e-71 Identities = 1178/1851 (64%), Gaps = 26/1851 (1%) Strand=Plus/Minus Query 70822 GCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAA 70881 |||| || || || | |||||||||||| || || || || | |||| ||| || Sbjct 157492 GCGGGCTTGGTGCGCAAATAGTACATGCCAGTCTTCAGGCCCATCTTCCACGCGTGGAAG 157433 Query 70882 TGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTT 70941 ||||| ||| || ||| ||| | || || || | ||| || || | |||||| Sbjct 157432 TGCATTGACGTCAGCTTGCCGTAGTTCGGTTCCGCCACGTGGATGTTGAACGACTGCGAC 157373 Query 70942 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 71001 ||||||||||| || |||| ||| || ||||| | ||| ||| || | ||| ||| Sbjct 157372 TGATCGATGAACGCACCCCGGTCGGCTGCCATCTGGATGCACGTTTTCACCGAAATCTCC 157313 Query 71002 CAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGAAG-GTTTG-TATTCTGAATGGAT 71058 |||| ||||| || | |||| | | |||| | | ||| | | ||||| || || Sbjct 157312 CAAACCGTTTTGTACAGATCGCGCACTTCCTTCGGTATTTGTTCGATGTTCTGGATCGAA 157253 Query 71059 CCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAA 71118 || | || | || | || || || || || | ||| | | ||| | | Sbjct 157252 CCGTTGTGGGCCAGGATTGTGTTCTTCATATCATCGTCCCACAGACCGTGCGTGGTCAGA 157193 Query 71119 ACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 71178 | | | || || | || || || ||||| || || |||| || | || |||| Sbjct 157192 TCCTTGATCAGGTGGTGGTTCACCACCTGAAACTCGCCCGACAGAACGCGCCGGTTGTAG 157133 Query 71179 ATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 71238 | || || ||||| || | ||||| || || ||||||||||| || || || || Sbjct 157132 ACGTTGGACGTGTACGGCTCGAACGACTCGTTGTTGCCCAAAATTTGTGCCGTCGAAGCC 157073 Query 71239 GTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGG--ATTTTATCTT 71296 |||||||| || || | || || || | | ||| ||| | || || || || | Sbjct 157072 GTCGGCATCGGCGCGAGCAGCAGTGAGTTGCGCACACCGTGT--TTGGCAATCTTTTCCT 157015 Query 71297 TTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNA 71356 | || | |||||||||| || |||| ||||| | Sbjct 157014 TCAGCGTCGCCCAATTCCACAGGTCCGTCGGTACCTTGTTCCACATGTCGTACTGCAGAA 156955 Query 71357 TGCCGTTACT-AGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGT 71415 | || || || | || | |||||| | || || ||||| ||||| || | |||| | Sbjct 156954 TACCCTTGCTCACCGGA-GATCCTTCGTACGTCTCGTACGGTCCCTCCTGAGCGGCCATC 156896 Query 71416 TCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCT 71475 || || || || || | || ||||| || ||||| || || |||| || |||||| | | Sbjct 156895 TCGCAGCTAGCTTCCAGCGCACCATAGTAGATGGTCTCAAATATCTGCTGATTGAGCTTT 156836 Query 71476 TGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGA 71535 || || |||| || || | || | | | || ||||| || || | || || Sbjct 156835 TGCGCCTCCGCACTCTCGTACGGGAAGCCCATCAAGATGAACGCATCAGCCATACCCTGG 156776 Query 71536 ACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAA 71595 ||||| |||||||| || | ||| | | | || || | ||||| || | || || Sbjct 156775 ACGCCGATACCGATCGGACGGTGGCGCATGTTCGAGCGCTTCGCTTCCGGCACCGGGTAG 156716 Query 71596 TAATTAATATCTATAATTTTATTGAGATTTC---TGACTATTACTTTGACCACATCCTTT 71652 | || | || ||||| || || | || | | || ||| ||| | || || || Sbjct 156715 AAGTTCACGTCGATAATCTTGTTCAAGTTGCGCGTCACGATT---TTGGCTACCTCTTTC 156659 Query 71653 AGTTTGAGAAAATCAAATCTCCCATCTATT---ACAAACACGTTCAAGGCAACAGATGCC 71709 || || |||||| | | | || || |||| ||||| |||| || ||| Sbjct 156658 AGCTTCGCGAAATCATACGTACGGTCGGGCTGGACGAACATGTTCAGCGCAATCGAGGCC 156599 Query 71710 AGATTACAAACGGCTACCTCATTAGCATCGGCA--TATTGTATAATTTCAGTGCAAAGAT 71767 || || || || || || || | | ||| | || | | ||| || |||||||| | Sbjct 156598 AGGTTGCACACCGCCACTTCGTC--CTTCGACGAGTACTCCACAATCTCGGTGCAAAGGT 156541 Query 71768 TACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 71827 || ||||||||||| || | |||||||| || || || || ||||| ||||| | Sbjct 156540 TAGAGCACTTGATGGTGCCGATGTTTTGTTGGTTGCTTTTGCGATTGCACGCGTCCTTGT 156481 Query 71828 AAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC 71887 | || || |||| || || || | ||| ||||| || ||||| ||| | | Sbjct 156480 ACAGCATGTACGGTACGCCCGTCTCCACCTGGGATTCGATGATCGCAAACCACAGATCCT 156421 Query 71888 GAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGA 71947 | ||||||| || | | || |||| || || || || |||| Sbjct 156420 GCGCCTTTACCTGGCGGATGAAGCGGCCCTCCTTTTCATAACCCGTGTACAACTTCTCGA 156361 Query 71948 ACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACT 72007 |||| || ||||| | || | | ||||| ||||| || | ||| |||||||| |||| Sbjct 156360 ACTCTTCGCCCCACGAATCGGCCAATCCGGGACAGTCGTGCGGGCACATCAAACTCCACG 156301 Query 72008 CTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 72067 | | | | | || || | ||| || ||||| || ||||| || || ||| | | Sbjct 156300 TTTCGTTCGCCTCCACGCGCTGCATGAACAGATCCGGTATCCAGAGCGCGTAAAACATGT 156241 Query 72068 CTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 72127 | || | | |||||| || || || || || || ||||| | ||| | | | || Sbjct 156240 CCCTTGCGCGCACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCTAAAAACTCAAACACAT 156181 Query 72128 CAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGAT 72187 | |||||||| |||| ||| ||||| | | || ||||| || || || ||||||| Sbjct 156180 CGCCGTGCCACGGCTCCAGGTAGATGGCAAACGCACCTGGCCGCTTATTGCCGCCCTGAT 156121 Query 72188 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCAC 72247 | | ||| | || || || || || || | || ||| || | | || || || | Sbjct 156120 CGACGTACCGTGCCGTATTGTTGTACACGCGCAGCATCGGTACCAACCCGTTCGAAATTC 156061 Query 72248 CATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTAT 72305 | || || || ||||| || |||| | || || || | ||| || | | || || Sbjct 156060 CGTTCGTGCCAGAGATGTACGTTCCCTTCGCCCGGATGCAGTGCACGTTCA--GCCCGAT 156003 Query 72306 TCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTAT 72365 || || ||| || ||||| | |||||| | || | ||| || ||||||||||| || Sbjct 156002 GCCACCGGCCGACTTGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAGATGCCCTCGAT 155943 Query 72366 ACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGC 72425 || || || |||| | || ||||| || |||| ||| |||| || |||| Sbjct 155942 GCTGTCGTCGGACATGGTCAGCAGAAAGCAAGACGACAGCTGGGGACGCTGCGTGGCCGC 155883 Query 72426 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTC 72485 || | ||| || ||||| || ||||| | || || || |||||||||||||| Sbjct 155882 CGCGAACATGGTCGGCGAAGCATGGGTAAAGTAACGCTCCGAGAGCAGATTGTACGTCTC 155823 Query 72486 AATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTG 72545 || |||| || || ||| || || || | ||||| ||||| | ||||||||| Sbjct 155822 GATCGCTGCCTCGATGTCCGTGCCGTGGATGCCGATGGCGACGCGCATCAGCATATGCTG 155763 Query 72546 AGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAA 72605 || || || || |||||| || || |||||||| || || |||| ||||| || Sbjct 155762 CGGCCTCTCGACAATCTTGCCCTTGATCTTCAACAAATACGAACGCTCCAGGGTTTTGAA 155703 Query 72606 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 72656 || ||||||||||| ||||| || |||||||||||| ||||||| || Sbjct 155702 GCCGAAATAGTTGTACCCGAAGTCACGATCGTAAATAATAGCCGAATTTAG 155652 >seq302 Length=5740867 Score = 152 bits (168), Expect = 7e-32 Identities = 363/546 (66%), Gaps = 7/546 (1%) Strand=Plus/Plus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 ||||||| || || ||||| |||||||| ||||| || | || || ||||| || Sbjct 73029 AACATCAGGCAGGCAAAATCACAGTGCAGTCCCTCGTCACGCGAGATCAACTCGTTCGAG 73088 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 ||||| || || ||||| ||||||||||| || ||||| || || | ||| || |||| Sbjct 73089 AACGTCAGACCCGGCATCAGGCCACGCTTCTTCAGCCAGAAGATGGCCGCGAAGCTTCCA 73148 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 |||||||| || || || || || || || | | || ||| ||| | ||| ||| Sbjct 73149 CTGAAGAAGATGCCCTCGACGGCAGCGAACGCCACCACTCGCTCGCCAAAGTTGGC-CTG 73207 Query 42236 TCATG-----TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 42290 | || ||||| || | ||||| ||||||||||| || || || || | ||||| Sbjct 73208 -CTTGCTCGAGATCCAGTTCAGCGCCCAGTCGGCCTTCTTCTTCACGCACGGGAGCGTTT 73266 Query 42291 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAA 42350 | || || || || || || | || || || || || || ||||||| | Sbjct 73267 CGATCGCGTTGAACAGGTACTCCCGCTCCTTCGGGTCGCGAATGTACGTGTCGATCAGCA 73326 Query 42351 GACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGG 42410 | ||||| || || | ||| || || || |||||||| |||||||| || | | Sbjct 73327 GCGAGTACATCTCGCTGTGCACGTTCTCCATCGCAATCTGAAACCCGTAGAAGCAGCGAG 73386 Query 42411 CCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGT 42470 |||| || ||||| || || | || || || | | ||| |||||||| || |||| Sbjct 73387 CCTCCGTCACCTGCACCTCCTGGCTGAAGCGCTCCACCAGATTCTCGTTCACGATACCGT 73446 Query 42471 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATT 42530 | ||| ||||| || |||| || || || || | ||| ||| | | Sbjct 73447 CCGAGGCGGCAAAGAAGGCCAGCACGTGCGAGATGAAGTGACGCTCGCTCGGCTTCAGCG 73506 Query 42531 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTT 42590 || ||| || || || || || || | || || ||||| || ||||| || || |||| Sbjct 73507 AATCCCAGTCCTTCATGTCCTTCGAGAGGTCCACCTCTTCCACGGTCCAGAAGGAAGCTT 73566 Query 42591 CTGCCT 42596 | |||| Sbjct 73567 CCGCCT 73572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671128579222160